Australian Microbiome Metagenomics Novaseq 102.100.100/138540
Dataset size is: 3.86 GiB
Data and Resources
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member_after_embargo:archive_ingestion_date:90:am-consortium-members |
| Access Control Date | 2022-03-16 |
| Access Control Mode | date |
| Sequence Data Type | illumina-shortread |
| Related Data | doi:10.25953/ep2x-jh13 |
| absorbance_260_230_ratio | 0.069 |
| absorbance_260_280_ratio | 1.327 |
| am_environment | Marine |
| ammonium (μmol/L) | 28.5577208654 |
| ammonium_meth | meth_2.1 |
| archive_ingestion_date | 2021-12-16 |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/amd/metagenomics-novaseq/ramaciotti/BPAOPS-1181/20211208_MGE_UNSW_HG7NLDSX2/ |
| bicarbonate (mg/L) | 127.85 |
| bicarbonate_meth | meth_2.1 |
| bioplatforms_dataset_id | 102.100.100/401950 |
| bioplatforms_project | Australian Microbiome Initiative (AM) |
| bioplatforms_project_code | AM_DNP |
| biotic_relationship | Free-living |
| carbonate (mg/L) | 0.0 |
| carbonate_meth | meth_2.1 |
| chloride (mg/L) | 20062.5 |
| chloride_meth | meth_2.1 |
| collection_date | 2021-03-16T02:30:00 |
| conductivity_aqueous (S/m) | 4.8578 |
| conductivity_aqueous_meth | meth_2.1 |
| conversion_software | bcl2fastq2 |
| conversion_software_version | v2.20 |
| data_generated | 2021-12-16 |
| data_type | MGE |
| database_schema_definitions_url | https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx |
| dataset_id | 102.100.100/401950 |
| date_of_transfer | 2021-12-16 |
| depth (m) | 0.0 |
| depth_lower (m) | 0.0 |
| depth_upper (m) | 0.0 |
| description | NovaSeq data package |
| dna_concentration | 0.679 |
| dna_concentration_method | picogreen |
| env_broad_scale | 1 Conservation and Natural Environments |
| env_local_scale | 1.1 Nature conservation |
| env_medium | Sea water [ENVO_00002149] |
| facility_code | ramaciotti |
| flowcell | HG7NLDSX2 |
| folder_name | 20211208_MGE_UNSW_HG7NLDSX2 |
| general_env_feature | Marine - neritic (coastal off shore) |
| geo_loc_name | Australia:Tasmania |
| icp_te_boron (mg/L) | 4.59 |
| icp_te_boron_meth | meth_2.1 |
| icp_te_calcium (mg/L) | 428.3 |
| icp_te_calcium_meth | meth_2.1 |
| icp_te_copper (mg/L) | 1e-10 |
| icp_te_copper_meth | meth_2.1 |
| icp_te_iron (mg/L) | 1e-10 |
| icp_te_iron_meth | meth_2.1 |
| icp_te_manganese (mg/L) | 1e-10 |
| icp_te_manganese_meth | meth_2.1 |
| icp_te_phosphorus (mg/L) | 1e-10 |
| icp_te_phosphorus_meth | meth_2.1 |
| icp_te_sulfur (mg/L) | 934.4 |
| icp_te_sulfur_meth | meth_2.1 |
| icp_te_zinc (mg/L) | 1e-10 |
| icp_te_zinc_meth | meth_2.1 |
| insert_size_range | 350-500 |
| lat_lon (decimal_degrees) | -40.991777 147.064239 |
| latitude (decimal_degrees) | -40.991777 |
| library_construction_protocol | Illumina DNA Prep |
| longitude (decimal_degrees) | 147.064239 |
| magnesium (mg/L) | 1335.0 |
| magnesium_meth | meth_2.1 |
| nitrate_nitrite (μmol/L) | 1e-10 |
| nitrate_nitrite_meth | meth_2.1 |
| nucl_acid_ext | meth_3.1.7 |
| number_of_raw_reads | 41042148.0 |
| number_pcr_cycle | 12.0 |
| omics | metagenomics |
| ph | 8.1 |
| ph_meth | meth_2.1 |
| potassium (mg/L) | 401.9 |
| potassium_meth | meth_2.1 |
| samp_collect_device | meth_1.22 |
| samp_size (L) | 2.0 |
| samp_vol_we_dna_ext (L) | 2.0 |
| sample_database_file | AM_db_v4.2_202402091224.db |
| sample_id | 102.100.100/138540 |
| sample_metadata_ingest_date | 2022-08-04 12:24:31 |
| sample_metadata_ingest_file | low_head_water_xlsxUTC_convert_xlsx |
| sample_metadata_update_history | Low_head_water_CSBP_210507_PREPAID_001_AM_WATER_format_UPDATE_xlsx; bush_blitz_water_sampling_method_UPDATE_xlsx; AM_curate_geo_loc_name_UPDATE_xlsx; AM_add_meth_for_ALL_DB_UPDATE_xlsx; |
| sample_site_location_description | Low Head |
| sample_submission_date | 2021-12-16 |
| sample_submitter | Bissett |
| sample_type | Coastal water |
| sequencer | NovaSeq 6000 |
| sodium (mg/L) | 11440.0 |
| sodium_meth | meth_2.1 |
| source_mat_id | 102.100.100/138540 |
| ticket | BPAOPS-1181 |
| url | https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/138540 |
| utc_date_sampled | 2021-03-16 |
| utc_time_sampled | 02:30:00 |