Australian Microbiome Metagenomics Analysed 102.100.100/141138

Maria Island, MGSD

Dataset size is: 21.26 GiB

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This data is made available openly under a Creative Commons Attribution license. Please see the initiative Data Policy for attribution information.

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Geospatial Coverage

Dataset extent

Map tiles & Data by OpenStreetMap, under CC BY SA.
Resource Permissions organization_member
Access Control Date 2022-11-09
Access Control Mode date
Sequence Data Type metagenomics-analysed
Related Data doi:10.25953/z3tc-a185
alkalinity (μmol/kg) 2319.57
alkalinity_meth meth_2.2
allo (mg/m3) 0.016
allo_meth meth_2.2
alpha_beta_car (mg/m3) 0.027
alpha_beta_car_meth meth_2.2
am_environment Marine
ammonium (μmol/L) 0.15
ammonium_meth meth_2.2
analysis_date 2022-08-10
analysis_method https://github.com/AusMicrobiome/metagenome
analysis_name 141138_MGSD_CSIRO
analysis_qc QC report included
anth (mg/m3) 1e-10
anth_meth meth_2.2
archive_ingestion_date 2022-08-19
asta (mg/m3) 1e-10
asta_meth meth_2.2
base_url https://downloads-qcif.bioplatforms.com/bpa/amd/metagenomics-analysed/BPAOPS-1315/MAI_MGSD_3/
bioplatforms_dataset_id 102.100.100/401949
bioplatforms_project Australian Microbiome Initiative (AM)
bioplatforms_project_code AM_NRS
biotic_relationship Free-living
but_fuco (mg/m3) 0.004
but_fuco_meth meth_2.2
cantha (mg/m3) 1e-10
cantha_meth meth_2.2
chlorophyll_a (mg/m3) 1.538
chlorophyll_a_meth meth_2.2
chlorophyll_b (mg/m3) 0.025
chlorophyll_b_meth meth_2.2
chlorophyll_c1 (mg/m3) 1e-10
chlorophyll_c1_meth meth_2.2
chlorophyll_c2 (mg/m3) 0.337
chlorophyll_c2_meth meth_2.2
chlorophyll_c3 (mg/m3) 0.094
chlorophyll_c3_meth meth_2.2
chlorophyll_ctd (mg/m3) 0.5626
chlorophyll_ctd_meth meth_2.2
collection_date 2020-09-28T23:00:00
computational_infrastructure CSIRO
conductivity_aqueous (S/m) 4.0324
conductivity_aqueous_meth meth_2.2
cphlide_a (mg/m3) 0.834
cphlide_a_meth meth_2.2
data_context Metagenomics
data_generated 2022-08-19
data_type MGSD
database_schema_definitions_url https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx
dataset_id 102.100.100/401949
dataset_id_description Bioplatforms Australia
date_of_transfer 2022-08-11
density (kg/m3) 1026.7222
density_meth meth_2.2
depth (m) 0.0
depth_lower (m) 0.0
depth_upper (m) 0.0
description Metagenome Analysed
diadino (mg/m3) 0.056
diadino_meth meth_2.2
diato (mg/m3) 0.004
diato_meth meth_2.2
dino (mg/m3) 1e-10
dino_meth meth_2.2
dv_cphl_a (mg/m3) 1e-10
dv_cphl_a_and_cphl_a (mg/m3) 1.538
dv_cphl_a_and_cphl_a_meth meth_2.2
dv_cphl_a_meth meth_2.2
dv_cphl_b (mg/m3) 1e-10
dv_cphl_b_and_cphl_b (mg/m3) 0.025
dv_cphl_b_and_cphl_b_meth meth_2.2
dv_cphl_b_meth meth_2.2
echin (mg/m3) 1e-10
echin_meth meth_2.2
env_broad_scale 7 Other
env_local_scale 7.2.1 Open ocean water-conservation
env_medium Sea water [ENVO_00002149]
folder MAI_MGSD_3
folder_name MAI_MGSD_3
fuco (mg/m3) 0.691
fuco_meth meth_2.2
funding_agency IMOS|CSIRO
general_env_feature Marine - neritic (coastal off shore)
geo_loc_name Australia:Tasman Sea coastal waters of continental Australia [GAZ:00143737]
gyro (mg/m3) 1e-10
gyro_meth meth_2.2
hex_fuco (mg/m3) 0.02
hex_fuco_meth meth_2.2
imos_site_code NRSMAI
keto_hex_fuco (mg/m3) 1e-10
keto_hex_fuco_meth meth_2.2
lat_lon (decimal_degrees) -42.5967 148.2333
latitude (decimal_degrees) -42.5967
longitude (decimal_degrees) 148.2333
lut (mg/m3) 1e-10
lut_meth meth_2.2
mg_dvp (mg/m3) 1e-10
mg_dvp_meth meth_2.2
neo (mg/m3) 0.003
neo_meth meth_2.2
nitrate (μmol/L) 1.8
nitrate_meth meth_2.2
nitrite (μmol/L) 0.16
nitrite_meth meth_2.2
nrs_sample_code MAI20200928_0
nrs_trip_code MAI20200928
nucl_acid_ext meth_3.1.9
omics metagenomics
oxygen (μmol/L) 291.1
oxygen_ctd_vol (mL/L) 292.0737
oxygen_ctd_vol_meth meth_2.2
oxygen_meth meth_2.2
perid (mg/m3) 0.021
perid_meth meth_2.2
phide_a (mg/m3) 1e-10
phide_a_meth meth_2.2
phosphate (μmol/L) 0.32
phosphate_meth meth_2.2
phytin_a (mg/m3) 1e-10
phytin_a_meth meth_2.2
phytin_b (mg/m3) 1e-10
phytin_b_meth meth_2.2
picoeukaryotes (cells/mL) 15516.0
picoeukaryotes_meth meth_2.2int
pras (mg/m3) 0.007
pras_meth meth_2.2
prochlorococcus (cells/mL) 106.5
prochlorococcus_meth meth_2.2int
pyrophide_a (mg/m3) 1e-10
pyrophide_a_meth meth_2.2
pyrophytin_a (mg/m3) 1e-10
pyrophytin_a_meth meth_2.2
salinity (PSU) 35.1968
salinity_lab (PSU) 35.193
salinity_lab_meth meth_2.2
salinity_meth meth_2.2
samp_collect_device meth_1.4
samp_mat_process meth_1.4
samp_size (L) 2.0
samp_vol_we_dna_ext (L) 2.0
sample_attribution IMOS|CSIRO
sample_database_file AM_db_v4.2_202402091224.db
sample_id 102.100.100/141138
sample_id_description Bioplatforms Australia
sample_metadata_ingest_date 2022-11-29 17:13:14
sample_metadata_ingest_file AODN_AM_NRS_ALL_to_SEP2022_202211291332_GOLD_FullREPLACE_xlsx
sample_site_location_description Maria Island
sample_submission_date 2022-08-11
sample_submitter Jodie van de Kamp [https://orcid.org/0000-0003-2167-0938]
sample_type Pelagic
secchi_depth (m) 16.0
secchi_depth_meth meth_2.2
silicate (μmol/L) 0.3
silicate_meth meth_2.2
source_mat_id 102.100.100/141138
store_cond meth_1.4
synechococcus (cells/mL) 20472.0
synechococcus_meth meth_2.2int
system_used CSIRO HPC
temp (degC) 12.1277
temp_meth meth_2.2
ticket BPAOPS-1315
total_co2 (μmol/kg) 2091.69
total_co2_meth meth_2.2
turbidity (NTU) 0.7398
turbidity_meth meth_2.2
url https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/141138
utc_date_sampled 2020-09-28
utc_time_sampled 23:00:00
viola (mg/m3) 0.002
viola_meth meth_2.2
zea (mg/m3) 1e-10
zea_meth meth_2.2
zooplankton_biomass (mg/m3) 4.9933
zooplankton_biomass_meth meth_2.2int