Australian Microbiome Amplicons ITS 102.100.100/138542 K3W8G

Low Head, ITS MiSeq

Dataset size is: 3.01 MiB

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Data and Resources

This data is made available openly under a Creative Commons Attribution license. Please see the initiative Data Policy for attribution information.

Additional Info Show Blank Fields

Field Value
Geospatial Coverage

Dataset extent

Map tiles & Data by OpenStreetMap, under CC BY SA.
Resource Permissions organization_member_after_embargo:date_of_transfer_to_archive:90:am-consortium-members
Access Control Date 2022-03-09
Access Control Mode date
Sequence Data Type illumina-amplicons
Related Data doi:10.25953/ep2x-jh13
am_environment Marine
ammonium (μmol/L) 28.5577208654
ammonium_meth meth_2.1
amplicon ITS
analysis_software MiSeq Reporter
analysis_software_version 2.6.2.3
analytical_platform MiSeq
base_url https://downloads-qcif.bioplatforms.com/bpa/amd/amplicons-miseq/its/BPAOPS-1180/
bicarbonate (mg/L) 129.1
bicarbonate_meth meth_2.1
bioplatforms_dataset_id 102.100.100/401950
bioplatforms_project Australian Microbiome Initiative (AM)
bioplatforms_project_code AM_DNP
biotic_relationship Free-living
carbonate (mg/L) 0.0
carbonate_meth meth_2.1
ccg_jira_ticket BPAOPS-1180
chloride (mg/L) 20180.0
chloride_meth meth_2.1
collection_date 2021-03-17T02:30:00
comments 138542_ITS_K3W8G_AATGGAGC-ATATACAC
conductivity_aqueous (S/m) 4.8818
conductivity_aqueous_meth meth_2.1
data_type ITS
database_schema_definitions_url https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx
dataset_id 102.100.100/401950
date_of_transfer 2021-12-09
date_of_transfer_to_archive 2021-12-16
depth (m) 0.0
depth_lower (m) 0.0
depth_upper (m) 0.0
description MiSeq data package
dilution_used 1:10
env_broad_scale 1 Conservation and Natural Environments
env_local_scale 1.1 Nature conservation
env_medium Sea water [ENVO_00002149]
flow_id K3W8G
folder_name 20211209_AM_ITS_UNSW_K3W8G
general_env_feature Marine - neritic (coastal off shore)
geo_loc_name Australia:Tasmania
icp_te_boron (mg/L) 4.66
icp_te_boron_meth meth_2.1
icp_te_calcium (mg/L) 434.4
icp_te_calcium_meth meth_2.1
icp_te_copper (mg/L) 1e-10
icp_te_copper_meth meth_2.1
icp_te_iron (mg/L) 1e-10
icp_te_iron_meth meth_2.1
icp_te_manganese (mg/L) 1e-10
icp_te_manganese_meth meth_2.1
icp_te_phosphorus (mg/L) 1e-10
icp_te_phosphorus_meth meth_2.1
icp_te_sulfur (mg/L) 943.1
icp_te_sulfur_meth meth_2.1
icp_te_zinc (mg/L) 1e-10
icp_te_zinc_meth meth_2.1
index AATGGAGC-ATATACAC
lat_lon (decimal_degrees) -40.982378 147.013644
latitude (decimal_degrees) -40.982378
longitude (decimal_degrees) 147.013644
magnesium (mg/L) 1336.0
magnesium_meth meth_2.1
nitrate_nitrite (μmol/L) 1e-10
nitrate_nitrite_meth meth_2.1
nucl_acid_ext meth_3.1.7
omics Genomics
pass_fail F
ph 7.3
ph_meth meth_2.1
potassium (mg/L) 405.6
potassium_meth meth_2.1
reads 6254.0
samp_collect_device meth_1.22
samp_size (L) 2.0
samp_vol_we_dna_ext (L) 2.0
sample_database_file AM_db_v4.2_202402091224.db
sample_id 102.100.100/138542
sample_metadata_ingest_date 2022-08-04 12:24:31
sample_metadata_ingest_file low_head_water_xlsxUTC_convert_xlsx
sample_metadata_update_history Low_head_water_CSBP_210507_PREPAID_001_AM_WATER_format_UPDATE_xlsx; bush_blitz_water_sampling_method_UPDATE_xlsx; AM_curate_geo_loc_name_UPDATE_xlsx; AM_add_meth_for_ALL_DB_UPDATE_xlsx;
sample_site_location_description Low Head
sample_submitter Bissett
sample_type Coastal water
sequencing_facility Ramaciotti
sodium (mg/L) 11440.0
sodium_meth meth_2.1
source_mat_id 102.100.100/138542
target ITS
ticket BPAOPS-1180
url https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/138542
utc_date_sampled 2021-03-17
utc_time_sampled 02:30:00