Australian Microbiome Amplicons ITS 102.100.100/137938 JB5WJ
Dataset size is: 94.48 MiB
Data and Resources
This data is made available openly under a Creative Commons Attribution license.
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:90:am-consortium-members |
| Access Control Date | 2020-12-28 |
| Access Control Mode | date |
| Sequence Data Type | illumina-amplicons |
| Related Data | doi:10.25953/t061-3v47 dataset_id:102.100.100/401920 |
| am_environment | Marine |
| amplicon | ITS |
| analysis_software | MiSeq Reporter |
| analysis_software_version | 2.6.2.3 |
| analytical_platform | MiSeq |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/amd/amplicons-miseq/its/BPAOPS-960/ |
| bioplatforms_dataset_id | 102.100.100/401921 |
| bioplatforms_project | Bioplatforms collaboration |
| biotic_relationship | Host associated |
| ccg_jira_ticket | BPAOPS-960 |
| collection_date | 2019-08-16T07:00:00 |
| comments | 137938_ITS_JB5WJ_TACTTCGC-GCTCTAGT |
| data_type | ITS |
| database_schema_definitions_url | https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx |
| dataset_id | 102.100.100/401921 |
| date_of_transfer | 2020-09-29 |
| date_of_transfer_to_archive | 2020-09-29 |
| days_since_planting (days) | 78.0 |
| depth (m) | -9999.0 |
| depth_lower (m) | -9999.0 |
| depth_upper (m) | -9999.0 |
| description | MiSeq data package |
| dilution_used | neat |
| env_broad_scale | 3 Production from Dryland Agriculture and Plantations |
| env_local_scale | 3.3.1 Cereals |
| env_medium | Air [ENVO_00002005] |
| flow_id | JB5WJ |
| folder_name | 20200929_AM_ITS_UNSW_JB5WJ |
| fresh_weight (g) | 21.0 |
| general_env_feature | Other (Mediterranean) |
| geo_loc_name | Australia:Western Australia |
| host_associated_microbiome_zone | leaf |
| host_species_variety | Scepter |
| host_state | Flag leaf emergence |
| host_type | Wheat |
| index | TACTTCGC-GCTCTAGT |
| lat_lon (decimal_degrees) | -33.74298 118.12227 |
| latitude (decimal_degrees) | -33.74298 |
| longitude (decimal_degrees) | 118.12227 |
| nucl_acid_ext | meth_3.1.12 |
| omics | Genomics |
| pass_fail | P |
| plant_id | EE |
| plant_stage | Flag leaf emergence |
| reads | 232662.0 |
| root_length (cm) | 8.5 |
| samp_collect_device | meth_1.17 |
| sample_attribution | IndigoAg |
| sample_database_file | AM_db_v4.2_202402091224.db |
| sample_id | 102.100.100/137938 |
| sample_metadata_ingest_date | 2021-04-23 11:18:54 |
| sample_metadata_ingest_file | Indigo_curated_HA_PLANT_UTC_depth_contextual_xlsx |
| sample_metadata_update_history | Indigo_curated_HA_PLANT_UTC_depth_contextual_UPDATE_xlsx; host_biotic_relationship_UPDATE_xlsx; indigo_nuc_ext_samp_col_methods_UPDATE_xlsx; AM_add_meth_for_ALL_DB_UPDATE_xlsx; Host_NCBI_taxonomies_UPDATE_xlsx; |
| sample_site_location_description | Gnowangerup |
| sample_submitter | Peter McMeekin |
| sample_type | Terrestrial plant |
| sequencing_facility | Ramaciotti |
| shoot_length (cm) | 47.5 |
| source_mat_id | 102.100.100/137938 |
| specific_host | Triticum aestivum [NCBI:txid4565] |
| store_cond | frozen; aluminium foil & zip-lock bag |
| target | ITS |
| temp (degC) | 14.0 |
| ticket | BPAOPS-960 |
| url | https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/137938 |
| utc_date_sampled | 2019-08-16 |
| utc_time_sampled | 07:00:00 |
| vegetation_type | Cropland |