Australian Microbiome Amplicons A16S 102.100.100/404242 LT43K

Rottnest Island, A16S MiSeq

Dataset size is: 52.09 MiB

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This data is made available openly under a Creative Commons Attribution license. Please see the initiative Data Policy for attribution information.

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Field Value
Geospatial Coverage

Dataset extent

Map tiles & Data by OpenStreetMap, under CC BY SA.
Resource Permissions organization_member_after_embargo:date_of_transfer_to_archive:90:am-consortium-members
Access Control Date 2025-02-12
Access Control Mode date
Sequence Data Type illumina-amplicons
alkalinity (μmol/kg) 2343.44
alkalinity_meth meth_2.2
allo (mg/m3) 0.006
allo_meth meth_2.2
alpha_beta_car (mg/m3) 0.005
alpha_beta_car_meth meth_2.2
am_environment Marine
ammonium (μmol/L) 0.09
ammonium_meth meth_2.2
amplicon A16S
analysis_software Local Run Manager
analysis_software_version 4.1.0
analytical_platform MiSeq
anth (mg/m3) 0.008
anth_meth meth_2.2
asta (mg/m3) 0.004
asta_meth meth_2.2
base_url https://downloads-qcif.bioplatforms.com/bpa/amd/amplicons-miseq/a16s/BPAOPS-1717/20241108_AM_A16_UNSW_LT43K/
biotic_relationship Free-living
but_fuco (mg/m3) 0.009
but_fuco_meth meth_2.2
cantha (mg/m3) 1e-10
cantha_meth meth_2.2
ccg_jira_ticket BPAOPS-1717
chlorophyll_a (mg/m3) 0.235
chlorophyll_a_meth meth_2.2
chlorophyll_b (mg/m3) 0.06
chlorophyll_b_meth meth_2.2
chlorophyll_c1 (mg/m3) 0.005
chlorophyll_c1_meth meth_2.2
chlorophyll_c2 (mg/m3) 0.021
chlorophyll_c2_meth meth_2.2
chlorophyll_c3 (mg/m3) 0.015
chlorophyll_c3_meth meth_2.2
chlorophyll_ctd (mg/m3) 1.1354
chlorophyll_ctd_meth meth_2.2
collection_date 2024-03-26T01:00:00
comments 404242_A16_LT43K_AAGACAGCTT-AGGTCAGCGA
conductivity_aqueous (S/m) 5.0162
conductivity_aqueous_meth meth_2.2
cphlide_a (mg/m3) 0.007
cphlide_a_meth meth_2.2
data_type A16S
database_schema_definitions_url https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx
date_of_transfer 2024-11-14
date_of_transfer_to_archive 2024-11-15
density (kg/m3) 1025.1173
density_meth meth_2.2
depth (m) 20.0
depth_lower (m) 20.0
depth_upper (m) 20.0
description MiSeq data package
diadino (mg/m3) 0.014
diadino_meth meth_2.2
diato (mg/m3) 0.005
diato_meth meth_2.2
dilution_used neat
dino (mg/m3) 1e-10
dino_meth meth_2.2
dna_concentration_submitter (ng/μL) 6.14
dna_concentration_submitter_meth meth_3.3.3
dv_cphl_a (mg/m3) 1e-10
dv_cphl_a_and_cphl_a (mg/m3) 0.235
dv_cphl_a_and_cphl_a_meth meth_2.2
dv_cphl_a_meth meth_2.2
dv_cphl_b (mg/m3) 1e-10
dv_cphl_b_and_cphl_b (mg/m3) 0.06
dv_cphl_b_and_cphl_b_meth meth_2.2
dv_cphl_b_meth meth_2.2
echin (mg/m3) 1e-10
echin_meth meth_2.2
env_broad_scale 7 Other
env_local_scale 7.2.1 Open ocean water-conservation
env_medium Sea water [ENVO_00002149]
flow_id LT43K
folder_name 20241108_AM_A16_UNSW_LT43K
fuco (mg/m3) 0.03
fuco_meth meth_2.2
funding_agency IMOS|CSIRO
general_env_feature Marine - neritic (coastal off shore)
geo_loc_name Australia:Eastern Indian Ocean coastal waters of Western Australia [GAZ_00051147]
gyro (mg/m3) 1e-10
gyro_meth meth_2.2
hex_fuco (mg/m3) 0.024
hex_fuco_meth meth_2.2
imos_site_code NRSROT
index AAGACAGCTT-AGGTCAGCGA
keto_hex_fuco (mg/m3) 1e-10
keto_hex_fuco_meth meth_2.2
lat_lon (decimal_degrees) -32.0 115.4167
latitude (decimal_degrees) -32.0
longitude (decimal_degrees) 115.4167
lut (mg/m3) 0.005
lut_meth meth_2.2
mg_dvp (mg/m3) 1e-10
mg_dvp_meth meth_2.2
neo (mg/m3) 0.006
neo_meth meth_2.2
nitrate (μmol/L) 1e-10
nitrate_meth meth_2.2
nitrite (μmol/L) 1e-10
nitrite_meth meth_2.2
nrs_sample_code ROT20240326_20
nrs_trip_code ROT20240326
nucl_acid_ext meth_3.1.9
omics Genomics
oxygen (μmol/L) 240.7
oxygen_ctd_vol (mL/L) 200.0
oxygen_ctd_vol_meth meth_2.2
oxygen_meth meth_2.2
pass_fail P
perid (mg/m3) 0.003
perid_meth meth_2.2
phide_a (mg/m3) 1e-10
phide_a_meth meth_2.2
phosphate (μmol/L) 0.08
phosphate_meth meth_2.2
phytin_a (mg/m3) 1e-10
phytin_a_meth meth_2.2
phytin_b (mg/m3) 1e-10
phytin_b_meth meth_2.2
picoeukaryotes (cells/mL) 22013.5
picoeukaryotes_meth meth_2.2
pras (mg/m3) 0.016
pras_meth meth_2.2
prochlorococcus (cells/mL) 6736.0
prochlorococcus_meth meth_2.2
pyrophide_a (mg/m3) 1e-10
pyrophide_a_meth meth_2.2
pyrophytin_a (mg/m3) 1e-10
pyrophytin_a_meth meth_2.2
reads 143936.0
salinity (PSU) 35.7945
salinity_lab (PSU) 35.799
salinity_lab_meth meth_2.2
salinity_meth meth_2.2
samp_collect_device meth_1.4
samp_mat_process meth_1.4
sample_attribution IMOS|CSIRO
sample_database_file AM_db_v4.2_202412051535.db
sample_id 102.100.100/404242
sample_metadata_ingest_date 2024-12-05 15:35:21
sample_metadata_ingest_file AODN_AM_NRS_202412021509_GOLD_xlsx
sample_site_location_description Rottnest Island
sample_submitter Jodie van de Kamp [https://orcid.org/0000-0003-2167-0938]
sample_type Pelagic
secchi_depth (m) 20.0
secchi_depth_meth meth_2.2
sequencing_facility Ramaciotti
silicate (μmol/L) 1.7
silicate_meth meth_2.2
source_mat_id 102.100.100/404242
store_cond meth_1.4
synechococcus (cells/mL) 46700.0
synechococcus_meth meth_2.2
target A16
temp (degC) 21.2189
temp_meth meth_2.2
ticket BPAOPS-1717
total_co2 (μmol/kg) 2072.65
total_co2_meth meth_2.2
turbidity (NTU) 0.3081
turbidity_meth meth_2.2
url https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/404242
utc_date_sampled 2024-03-26
utc_time_sampled 01:00:00
viola (mg/m3) 0.008
viola_meth meth_2.2
zea (mg/m3) 0.038
zea_meth meth_2.2
zooplankton_biomass (mg/m3) 14.5696
zooplankton_biomass_meth meth_2.2int