Australian Microbiome Amplicons A16S 102.100.100/404236 LT43K

Rottnest Island, A16S MiSeq

Dataset size is: 50.17 MiB

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This data is made available openly under a Creative Commons Attribution license. Please see the initiative Data Policy for attribution information.

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Field Value
Geospatial Coverage

Dataset extent

Map tiles & Data by OpenStreetMap, under CC BY SA.
Resource Permissions organization_member_after_embargo:date_of_transfer_to_archive:90:am-consortium-members
Access Control Date 2025-02-12
Access Control Mode date
Sequence Data Type illumina-amplicons
alkalinity (μmol/kg) 2340.14
alkalinity_meth meth_2.2
allo (mg/m3) 1e-10
allo_meth meth_2.2
alpha_beta_car (mg/m3) 0.006
alpha_beta_car_meth meth_2.2
am_environment Marine
ammonium (μmol/L) 1e-10
ammonium_meth meth_2.2
amplicon A16S
analysis_software Local Run Manager
analysis_software_version 4.1.0
analytical_platform MiSeq
anth (mg/m3) 1e-10
anth_meth meth_2.2
asta (mg/m3) 1e-10
asta_meth meth_2.2
base_url https://downloads-qcif.bioplatforms.com/bpa/amd/amplicons-miseq/a16s/BPAOPS-1717/20241108_AM_A16_UNSW_LT43K/
biotic_relationship Free-living
but_fuco (mg/m3) 0.006
but_fuco_meth meth_2.2
cantha (mg/m3) 1e-10
cantha_meth meth_2.2
ccg_jira_ticket BPAOPS-1717
chlorophyll_a (mg/m3) 0.205
chlorophyll_a_meth meth_2.2
chlorophyll_b (mg/m3) 0.008
chlorophyll_b_meth meth_2.2
chlorophyll_c1 (mg/m3) 0.002
chlorophyll_c1_meth meth_2.2
chlorophyll_c2 (mg/m3) 0.025
chlorophyll_c2_meth meth_2.2
chlorophyll_c3 (mg/m3) 0.013
chlorophyll_c3_meth meth_2.2
chlorophyll_ctd (mg/m3) 0.0116
chlorophyll_ctd_meth meth_2.2
collection_date 2023-11-28T00:21:00
comments 404236_A16_LT43K_TTCACACAGT-AACACTGAAG
conductivity_aqueous (S/m) 4.9478
conductivity_aqueous_meth meth_2.2
cphlide_a (mg/m3) 0.008
cphlide_a_meth meth_2.2
data_type A16S
database_schema_definitions_url https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx
date_of_transfer 2024-11-14
date_of_transfer_to_archive 2024-11-15
density (kg/m3) 1025.2296
density_meth meth_2.2
depth (m) 20.0
depth_lower (m) 20.0
depth_upper (m) 20.0
description MiSeq data package
diadino (mg/m3) 0.025
diadino_meth meth_2.2
diato (mg/m3) 0.002
diato_meth meth_2.2
dilution_used neat
dino (mg/m3) 1e-10
dino_meth meth_2.2
dna_concentration_submitter (ng/μL) 4.57
dna_concentration_submitter_meth meth_3.3.3
dv_cphl_a (mg/m3) 1e-10
dv_cphl_a_and_cphl_a (mg/m3) 0.205
dv_cphl_a_and_cphl_a_meth meth_2.2
dv_cphl_a_meth meth_2.2
dv_cphl_b (mg/m3) 1e-10
dv_cphl_b_and_cphl_b (mg/m3) 0.008
dv_cphl_b_and_cphl_b_meth meth_2.2
dv_cphl_b_meth meth_2.2
echin (mg/m3) 1e-10
echin_meth meth_2.2
env_broad_scale 7 Other
env_local_scale 7.2.1 Open ocean water-conservation
env_medium Sea water [ENVO_00002149]
flow_id LT43K
folder_name 20241108_AM_A16_UNSW_LT43K
fuco (mg/m3) 0.061
fuco_meth meth_2.2
funding_agency IMOS|CSIRO
general_env_feature Marine - neritic (coastal off shore)
geo_loc_name Australia:Eastern Indian Ocean coastal waters of Western Australia [GAZ_00051147]
gyro (mg/m3) 1e-10
gyro_meth meth_2.2
hex_fuco (mg/m3) 0.026
hex_fuco_meth meth_2.2
imos_site_code NRSROT
index TTCACACAGT-AACACTGAAG
keto_hex_fuco (mg/m3) 1e-10
keto_hex_fuco_meth meth_2.2
lat_lon (decimal_degrees) -32.0 115.4167
latitude (decimal_degrees) -32.0
longitude (decimal_degrees) 115.4167
lut (mg/m3) 1e-10
lut_meth meth_2.2
mg_dvp (mg/m3) 1e-10
mg_dvp_meth meth_2.2
neo (mg/m3) 0.001
neo_meth meth_2.2
nitrate (μmol/L) 1e-10
nitrate_meth meth_2.2
nitrite (μmol/L) 1e-10
nitrite_meth meth_2.2
nrs_sample_code ROT20231128_20
nrs_trip_code ROT20231128
nucl_acid_ext meth_3.1.9
omics Genomics
oxygen_ctd_vol (mL/L) 222.0
oxygen_ctd_vol_meth meth_2.2
pass_fail P
perid (mg/m3) 0.002
perid_meth meth_2.2
phide_a (mg/m3) 1e-10
phide_a_meth meth_2.2
phosphate (μmol/L) 0.1
phosphate_meth meth_2.2
phytin_a (mg/m3) 1e-10
phytin_a_meth meth_2.2
phytin_b (mg/m3) 1e-10
phytin_b_meth meth_2.2
picoeukaryotes (cells/mL) 8824.0
picoeukaryotes_meth meth_2.2
pras (mg/m3) 0.002
pras_meth meth_2.2
prochlorococcus (cells/mL) 6185.5
prochlorococcus_meth meth_2.2
pyrophide_a (mg/m3) 1e-10
pyrophide_a_meth meth_2.2
pyrophytin_a (mg/m3) 1e-10
pyrophytin_a_meth meth_2.2
reads 116689.0
salinity (PSU) 35.7252
salinity_lab (PSU) 35.725
salinity_lab_meth meth_2.2
salinity_meth meth_2.2
samp_collect_device meth_1.4
samp_mat_process meth_1.4
sample_attribution IMOS|CSIRO
sample_database_file AM_db_v4.2_202412051535.db
sample_id 102.100.100/404236
sample_metadata_ingest_date 2024-12-05 15:35:21
sample_metadata_ingest_file AODN_AM_NRS_202412021509_GOLD_xlsx
sample_site_location_description Rottnest Island
sample_submitter Jodie van de Kamp [https://orcid.org/0000-0003-2167-0938]
sample_type Pelagic
secchi_depth (m) 19.0
secchi_depth_meth meth_2.2
sequencing_facility Ramaciotti
silicate (μmol/L) 1.1
silicate_meth meth_2.2
source_mat_id 102.100.100/404236
store_cond meth_1.4
synechococcus (cells/mL) 55627.5
synechococcus_meth meth_2.2
target A16
temp (degC) 20.6442
temp_meth meth_2.2
ticket BPAOPS-1717
total_co2 (μmol/kg) 2052.15
total_co2_meth meth_2.2
turbidity (NTU) 0.3198
turbidity_meth meth_2.2
url https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/404236
utc_date_sampled 2023-11-28
utc_time_sampled 00:21:00
viola (mg/m3) 0.002
viola_meth meth_2.2
zea (mg/m3) 0.019
zea_meth meth_2.2
zooplankton_biomass (mg/m3) 11.3319
zooplankton_biomass_meth meth_2.2int