Australian Microbiome Amplicons A16S 102.100.100/400845 KFTCK

Maria Island, A16S MiSeq

Dataset size is: 90.68 MiB

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This data is made available openly under a Creative Commons Attribution license. Please see the initiative Data Policy for attribution information.

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Field Value
Geospatial Coverage

Dataset extent

Map tiles & Data by OpenStreetMap, under CC BY SA.
Resource Permissions organization_member_after_embargo:date_of_transfer_to_archive:90:am-consortium-members
Access Control Date 2022-09-19
Access Control Mode date
Sequence Data Type illumina-amplicons
Related Data doi:10.25953/z3tc-a185
alkalinity (μmol/kg) 2321.76
alkalinity_meth meth_2.2
am_environment Marine
ammonium (μmol/L) 0.06
ammonium_meth meth_2.2
amplicon A16S
analysis_software MiSeq Reporter
analysis_software_version 2.6.2.3
analytical_platform MiSeq
base_url https://downloads-qcif.bioplatforms.com/bpa/amd/amplicons-miseq/a16s/BPAOPS-1284/
bioplatforms_dataset_id 102.100.100/401949
bioplatforms_project Australian Microbiome Initiative (AM)
bioplatforms_project_code AM_NRS
biotic_relationship Free-living
ccg_jira_ticket BPAOPS-1284
collection_date 2021-12-14T22:35:00
comments 400845_A16_KFTCK_AAGAGGCA-TCTCTCCG
data_type A16S
database_schema_definitions_url https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx
dataset_id 102.100.100/401949
date_of_transfer 2022-06-21
date_of_transfer_to_archive 2022-06-22
depth (m) 85.0
depth_lower (m) 85.0
depth_upper (m) 85.0
description MiSeq data package
dilution_used Neat
env_broad_scale 7 Other
env_local_scale 7.2.1 Open ocean water-conservation
env_medium Sea water [ENVO_00002149]
flow_id KFTCK
folder_name 20220621_AM_A16S_UNSW_KFTCK
funding_agency IMOS|CSIRO
general_env_feature Marine - neritic (coastal off shore)
geo_loc_name Australia:Tasman Sea coastal waters of continental Australia [GAZ_00143737]
imos_site_code NRSMAI
index AAGAGGCA-TCTCTCCG
lat_lon (decimal_degrees) -42.5967 148.2333
latitude (decimal_degrees) -42.5967
longitude (decimal_degrees) 148.2333
nitrate (μmol/L) 8.5
nitrate_meth meth_2.2
nitrite (μmol/L) 0.32
nitrite_meth meth_2.2
nrs_sample_code MAI20211214_85
nrs_trip_code MAI20211214
nucl_acid_ext meth_3.1.9
omics Genomics
oxygen (μmol/L) 223.8
oxygen_meth meth_2.2
pass_fail P
phosphate (μmol/L) 0.67
phosphate_meth meth_2.2
picoeukaryotes (cells/mL) 9374.0
picoeukaryotes_meth meth_2.2
prochlorococcus (cells/mL) 637.5
prochlorococcus_meth meth_2.2
reads 216911.0
salinity_lab (PSU) 35.275
salinity_lab_meth meth_2.2
samp_collect_device meth_1.4
samp_mat_process meth_1.4
samp_size (L) 2.0
samp_vol_we_dna_ext (L) 2.0
sample_attribution IMOS|CSIRO
sample_database_file AM_db_v4.2_202408091431.db
sample_id 102.100.100/400845
sample_metadata_ingest_date 2022-11-29 17:13:14
sample_metadata_ingest_file AODN_AM_NRS_ALL_to_SEP2022_202211291332_GOLD_FullREPLACE_xlsx
sample_site_location_description Maria Island
sample_submitter Jodie van de Kamp [https://orcid.org/0000-0003-2167-0938]
sample_type Pelagic
secchi_depth (m) 13.0
secchi_depth_meth meth_2.2
sequencing_facility Ramaciotti
silicate (μmol/L) 3.1
silicate_meth meth_2.2
source_mat_id 102.100.100/400845
store_cond meth_1.4
synechococcus (cells/mL) 7637.5
synechococcus_meth meth_2.2
target A16
ticket BPAOPS-1284
total_co2 (μmol/kg) 2121.01
total_co2_meth meth_2.2
url https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/400845
utc_date_sampled 2021-12-14
utc_time_sampled 22:35:00
zooplankton_biomass (mg/m3) 26.579
zooplankton_biomass_meth meth_2.2int