Australian Microbiome Amplicons A16S 102.100.100/139751 J8H8P

Maria Island, A16S MiSeq

Dataset size is: 44.49 MiB

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Data and Resources

This data is made available openly under a Creative Commons Attribution license. Please see the initiative Data Policy for attribution information.

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Field Value
Geospatial Coverage

Dataset extent

Map tiles & Data by OpenStreetMap, under CC BY SA.
Resource Permissions organization_member_after_embargo:date_of_transfer_to_archive:90:am-consortium-members
Access Control Date 2020-10-07
Access Control Mode date
Sequence Data Type illumina-amplicons
Related Data doi:10.25953/z3tc-a185
alkalinity (μmol/kg) 2302.38
alkalinity_meth meth_2.2
allo (mg/m3) 0.002
allo_meth meth_2.2
alpha_beta_car (mg/m3) 0.01
alpha_beta_car_meth meth_2.2
am_environment Marine
ammonium (μmol/L) 0.39
ammonium_meth meth_2.2
amplicon A16S
analysis_software MiSeq Reporter
analysis_software_version 2.6.2.3
analytical_platform MiSeq
anth (mg/m3) 1e-10
anth_meth meth_2.2
asta (mg/m3) 1e-10
asta_meth meth_2.2
base_url https://downloads-qcif.bioplatforms.com/bpa/amd/amplicons-miseq/a16s/BPAOPS-936/
bioplatforms_dataset_id 102.100.100/401949
bioplatforms_project Australian Microbiome Initiative (AM)
bioplatforms_project_code AM_NRS
biotic_relationship Free-living
but_fuco (mg/m3) 0.036
but_fuco_meth meth_2.2
cantha (mg/m3) 1e-10
cantha_meth meth_2.2
ccg_jira_ticket BPAOPS-936
chlorophyll_a (mg/m3) 0.359
chlorophyll_a_meth meth_2.2
chlorophyll_b (mg/m3) 0.041
chlorophyll_b_meth meth_2.2
chlorophyll_c1 (mg/m3) 1e-10
chlorophyll_c1_meth meth_2.2
chlorophyll_c2 (mg/m3) 0.061
chlorophyll_c2_meth meth_2.2
chlorophyll_c3 (mg/m3) 0.053
chlorophyll_c3_meth meth_2.2
chlorophyll_ctd (mg/m3) 0.1965
chlorophyll_ctd_meth meth_2.2
collection_date 2020-01-06T22:45:00
comments 139751_A16_J8H8P_TACGCTGC-CTAAGCCT
conductivity_aqueous (S/m) 4.4648
conductivity_aqueous_meth meth_2.2
cphlide_a (mg/m3) 1e-10
cphlide_a_meth meth_2.2
data_type A16S
database_schema_definitions_url https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx
dataset_id 102.100.100/401949
date_of_transfer 2020-07-09
date_of_transfer_to_archive 2020-07-14
density (kg/m3) 1025.7288
density_meth meth_2.2
depth (m) 0.0
depth_lower (m) 0.0
depth_upper (m) 0.0
description MiSeq data package
diadino (mg/m3) 0.038
diadino_meth meth_2.2
diato (mg/m3) 0.003
diato_meth meth_2.2
dilution_used neat
dino (mg/m3) 1e-10
dino_meth meth_2.2
dv_cphl_a (mg/m3) 1e-10
dv_cphl_a_and_cphl_a (mg/m3) 0.359
dv_cphl_a_and_cphl_a_meth meth_2.2
dv_cphl_a_meth meth_2.2
dv_cphl_b (mg/m3) 1e-10
dv_cphl_b_and_cphl_b (mg/m3) 0.041
dv_cphl_b_and_cphl_b_meth meth_2.2
dv_cphl_b_meth meth_2.2
echin (mg/m3) 1e-10
echin_meth meth_2.2
env_broad_scale 7 Other
env_local_scale 7.2.1 Open ocean water-conservation
env_medium Sea water [ENVO_00002149]
flow_id J8H8P
folder_name 20200709_AM_A16_UNSW_J8H8P
fuco (mg/m3) 0.059
fuco_meth meth_2.2
funding_agency IMOS|CSIRO
general_env_feature Marine - neritic (coastal off shore)
geo_loc_name Australia:Tasman Sea coastal waters of continental Australia [GAZ_00143737]
gyro (mg/m3) 1e-10
gyro_meth meth_2.2
hex_fuco (mg/m3) 0.089
hex_fuco_meth meth_2.2
imos_site_code NRSMAI
index TACGCTGC-CTAAGCCT
keto_hex_fuco (mg/m3) 1e-10
keto_hex_fuco_meth meth_2.2
lat_lon (decimal_degrees) -42.5967 148.2333
latitude (decimal_degrees) -42.5967
longitude (decimal_degrees) 148.2333
lut (mg/m3) 1e-10
lut_meth meth_2.2
mg_dvp (mg/m3) 1e-10
mg_dvp_meth meth_2.2
neo (mg/m3) 0.005
neo_meth meth_2.2
nitrate (μmol/L) 1e-10
nitrate_meth meth_2.2
nitrite (μmol/L) 1e-10
nitrite_meth meth_2.2
nrs_sample_code MAI20200106_0
nrs_trip_code MAI20200106
nucl_acid_ext meth_3.1.9
omics Genomics
oxygen (μmol/L) 261.8
oxygen_ctd_vol (mL/L) 238.5719
oxygen_ctd_vol_meth meth_2.2
oxygen_meth meth_2.2
pass_fail P
perid (mg/m3) 0.028
perid_meth meth_2.2
phide_a (mg/m3) 1e-10
phide_a_meth meth_2.2
phosphate (μmol/L) 0.12
phosphate_meth meth_2.2
phytin_a (mg/m3) 1e-10
phytin_a_meth meth_2.2
phytin_b (mg/m3) 1e-10
phytin_b_meth meth_2.2
picoeukaryotes (cells/mL) 15994.0
picoeukaryotes_meth meth_2.2int
pras (mg/m3) 0.007
pras_meth meth_2.2
prochlorococcus (cells/mL) 339.0
prochlorococcus_meth meth_2.2int
pyrophide_a (mg/m3) 1e-10
pyrophide_a_meth meth_2.2
pyrophytin_a (mg/m3) 1e-10
pyrophytin_a_meth meth_2.2
reads 106086.0
salinity (PSU) 35.1453
salinity_lab (PSU) 35.127
salinity_lab_meth meth_2.2
salinity_meth meth_2.2
samp_collect_device meth_1.4
samp_mat_process meth_1.4
samp_size (L) 2.0
samp_vol_we_dna_ext (L) 2.0
sample_attribution IMOS|CSIRO
sample_database_file AM_db_v4.2_202408091431.db
sample_id 102.100.100/139751
sample_metadata_ingest_date 2022-11-29 17:13:14
sample_metadata_ingest_file AODN_AM_NRS_ALL_to_SEP2022_202211291332_GOLD_FullREPLACE_xlsx
sample_site_location_description Maria Island
sample_submitter Jodie van de Kamp [https://orcid.org/0000-0003-2167-0938]
sample_type Pelagic
secchi_depth (m) 14.0
secchi_depth_meth meth_2.2
sequencing_facility Ramaciotti
silicate (μmol/L) 0.3
silicate_meth meth_2.2
source_mat_id 102.100.100/139751
store_cond meth_1.4
synechococcus (cells/mL) 6431.0
synechococcus_meth meth_2.2int
target A16
temp (degC) 16.5831
temp_meth meth_2.2
ticket BPAOPS-936
total_co2 (μmol/kg) 2054.4
total_co2_meth meth_2.2
tss (mg/L) 0.4
tss_meth meth_2.2int
turbidity (NTU) 0.6577
turbidity_meth meth_2.2
url https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/139751
utc_date_sampled 2020-01-06
utc_time_sampled 22:45:00
viola (mg/m3) 0.003
viola_meth meth_2.2
zea (mg/m3) 1e-10
zea_meth meth_2.2
zooplankton_biomass (mg/m3) 64.625
zooplankton_biomass_meth meth_2.2int