Australian Microbiome Amplicons 18S 102.100.100/403701 LHPV7
Dataset size is: 9.85 MiB
This dataset is currently under a short embargo period until July 1, 2024 to enable primary access by research partners.
If you would like access during this period please contact us here or contact the project lead directly (see details in the table below) for collaboration opportunities.
Data and Resources
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Data Policy
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:90:am-consortium-members |
| Access Control Date | 2024-07-01 |
| Access Control Mode | date |
| Sequence Data Type | illumina-amplicons |
| allo (mg/m3) | 0.017 |
| allo_meth | meth_2.2 |
| alpha_beta_car (mg/m3) | 0.032 |
| alpha_beta_car_meth | meth_2.2 |
| am_environment | Marine |
| ammonium (μmol/L) | 0.19 |
| ammonium_meth | meth_2.2 |
| amplicon | 18S |
| analysis_software | MiSeq Reporter |
| analysis_software_version | 2.6.2.3 |
| analytical_platform | MiSeq |
| anth (mg/m3) | 1e-10 |
| anth_meth | meth_2.2 |
| asta (mg/m3) | 1e-10 |
| asta_meth | meth_2.2 |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/amd/amplicons-miseq/18s/BPAOPS-1572/240219_AM_18S_UNSW_LHPV7/ |
| biotic_relationship | Free-living |
| but_fuco (mg/m3) | 1e-10 |
| but_fuco_meth | meth_2.2 |
| cantha (mg/m3) | 1e-10 |
| cantha_meth | meth_2.2 |
| ccg_jira_ticket | BPAOPS-1572 |
| chlorophyll_a (mg/m3) | 0.621 |
| chlorophyll_a_meth | meth_2.2 |
| chlorophyll_b (mg/m3) | 0.07 |
| chlorophyll_b_meth | meth_2.2 |
| chlorophyll_c1 (mg/m3) | 1e-10 |
| chlorophyll_c1_meth | meth_2.2 |
| chlorophyll_c2 (mg/m3) | 0.061 |
| chlorophyll_c2_meth | meth_2.2 |
| chlorophyll_c3 (mg/m3) | 0.028 |
| chlorophyll_c3_meth | meth_2.2 |
| chlorophyll_ctd (mg/m3) | 0.3767 |
| chlorophyll_ctd_meth | meth_2.2 |
| collection_date | 2023-05-24T21:30:00 |
| comments | 403701_18S_LHPV7_GCTCATGA-CCTAGAGT |
| conductivity_aqueous (S/m) | 5.314 |
| conductivity_aqueous_meth | meth_2.2 |
| cphlide_a (mg/m3) | 0.045 |
| cphlide_a_meth | meth_2.2 |
| data_type | 18S |
| database_schema_definitions_url | https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx |
| date_of_transfer | 2024-04-02 |
| date_of_transfer_to_archive | 2024-04-02 |
| density (kg/m3) | 1022.4754 |
| density_meth | meth_2.2 |
| depth (m) | 17.0 |
| depth_lower (m) | 17.0 |
| depth_upper (m) | 17.0 |
| description | MiSeq data package |
| diadino (mg/m3) | 0.015 |
| diadino_meth | meth_2.2 |
| diato (mg/m3) | 1e-10 |
| diato_meth | meth_2.2 |
| dilution_used | neat |
| dino (mg/m3) | 1e-10 |
| dino_meth | meth_2.2 |
| dv_cphl_a (mg/m3) | 1e-10 |
| dv_cphl_a_and_cphl_a (mg/m3) | 0.621 |
| dv_cphl_a_and_cphl_a_meth | meth_2.2 |
| dv_cphl_a_meth | meth_2.2 |
| dv_cphl_b (mg/m3) | 1e-10 |
| dv_cphl_b_and_cphl_b (mg/m3) | 0.07 |
| dv_cphl_b_and_cphl_b_meth | meth_2.2 |
| dv_cphl_b_meth | meth_2.2 |
| echin (mg/m3) | 1e-10 |
| echin_meth | meth_2.2 |
| env_broad_scale | 7 Other |
| env_local_scale | 7.2.1 Open ocean water-conservation |
| env_medium | Sea water [ENVO_00002149] |
| flow_id | LHPV7 |
| folder_name | 240219_AM_18S_UNSW_LHPV7 |
| fuco (mg/m3) | 0.162 |
| fuco_meth | meth_2.2 |
| funding_agency | IMOS|CSIRO |
| general_env_feature | Marine - neritic (coastal off shore) |
| geo_loc_name | Australia:Beagle Gulf [GAZ:00051048] |
| gyro (mg/m3) | 1e-10 |
| gyro_meth | meth_2.2 |
| hex_fuco (mg/m3) | 0.024 |
| hex_fuco_meth | meth_2.2 |
| imos_site_code | NRSDAR |
| index | GCTCATGA-CCTAGAGT |
| keto_hex_fuco (mg/m3) | 1e-10 |
| keto_hex_fuco_meth | meth_2.2 |
| lat_lon (decimal_degrees) | -12.4 130.768 |
| latitude (decimal_degrees) | -12.4 |
| longitude (decimal_degrees) | 130.768 |
| lut (mg/m3) | 1e-10 |
| lut_meth | meth_2.2 |
| mg_dvp (mg/m3) | 1e-10 |
| mg_dvp_meth | meth_2.2 |
| neo (mg/m3) | 0.005 |
| neo_meth | meth_2.2 |
| nitrate (μmol/L) | 0.2 |
| nitrate_meth | meth_2.2 |
| nitrite (μmol/L) | 0.3 |
| nitrite_meth | meth_2.2 |
| nrs_sample_code | DAR20230524_2130_17 |
| nrs_trip_code | DAR20230524_2130 |
| nucl_acid_ext | meth_3.1.9 |
| omics | Genomics |
| pass_fail | P |
| perid (mg/m3) | 0.005 |
| perid_meth | meth_2.2 |
| phide_a (mg/m3) | 1e-10 |
| phide_a_meth | meth_2.2 |
| phosphate (μmol/L) | 0.37 |
| phosphate_meth | meth_2.2 |
| phytin_a (mg/m3) | 1e-10 |
| phytin_a_meth | meth_2.2 |
| phytin_b (mg/m3) | 1e-10 |
| phytin_b_meth | meth_2.2 |
| pras (mg/m3) | 0.021 |
| pras_meth | meth_2.2 |
| pyrophide_a (mg/m3) | 1e-10 |
| pyrophide_a_meth | meth_2.2 |
| pyrophytin_a (mg/m3) | 1e-10 |
| pyrophytin_a_meth | meth_2.2 |
| reads | 30806.0 |
| salinity (PSU) | 34.2066 |
| salinity_lab (PSU) | 34.202 |
| salinity_lab_meth | meth_2.2 |
| salinity_meth | meth_2.2 |
| samp_collect_device | meth_1.4 |
| samp_mat_process | meth_1.4 |
| sample_attribution | IMOS|CSIRO |
| sample_database_file | AM_db_v4.2_202402091224.db |
| sample_id | 102.100.100/403701 |
| sample_metadata_ingest_date | 2024-02-09 12:24:08 |
| sample_metadata_ingest_file | AODN_AM_NRS_202402081638_GOLD_xlsx |
| sample_site_location_description | Darwin |
| sample_submitter | Jodie van de Kamp [https://orcid.org/0000-0003-2167-0938] |
| sample_type | Pelagic |
| secchi_depth (m) | 1.5 |
| secchi_depth_meth | meth_2.2 |
| sequencing_facility | Ramaciotti |
| silicate (μmol/L) | 4.8 |
| silicate_meth | meth_2.2 |
| source_mat_id | 102.100.100/403701 |
| store_cond | meth_1.4 |
| target | 18S |
| temp (degC) | 26.1035 |
| temp_meth | meth_2.2 |
| ticket | BPAOPS-1572 |
| url | https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/403701 |
| utc_date_sampled | 2023-05-24 |
| utc_time_sampled | 21:30:00 |
| viola (mg/m3) | 0.004 |
| viola_meth | meth_2.2 |
| zea (mg/m3) | 0.069 |
| zea_meth | meth_2.2 |
| zooplankton_biomass (mg/m3) | 94.7733 |
| zooplankton_biomass_meth | meth_2.2int |