Australian Microbiome Amplicons 18S 102.100.100/403670 LHPV7

Rottnest Island, 18S MiSeq

Dataset size is: 32.54 MiB

Log in or Register to access resource
 
 

 

Data and Resources

This data is made available openly under a Creative Commons Attribution license. Please see the initiative Data Policy for attribution information.

Additional Info Show Blank Fields

Field Value
Geospatial Coverage

Dataset extent

Map tiles & Data by OpenStreetMap, under CC BY SA.
Resource Permissions organization_member_after_embargo:date_of_transfer_to_archive:90:am-consortium-members
Access Control Date 2024-08-13
Access Control Mode date
Sequence Data Type illumina-amplicons
am_environment Marine
ammonium (μmol/L) 0.05
ammonium_meth meth_2.2
amplicon 18S
analysis_software Local Run Manager
analysis_software_version 4.1.0
analytical_platform MiSeq
base_url https://downloads-qcif.bioplatforms.com/bpa/amd/amplicons-miseq/18s/BPAOPS-1587/240219_AM_18S_UNSW_LHPV7/
biotic_relationship Free-living
ccg_jira_ticket BPAOPS-1587
chlorophyll_ctd (mg/m3) 0.0192
chlorophyll_ctd_meth meth_2.2
collection_date 2023-10-24T00:50:00
comments 403670_18S_LHPV7_AAGAGGCA-CCTAGAGT
conductivity_aqueous (S/m) 4.7863
conductivity_aqueous_meth meth_2.2
data_type 18S
database_schema_definitions_url https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx
date_of_transfer 2024-05-15
date_of_transfer_to_archive 2024-05-16
density (kg/m3) 1025.4597
density_meth meth_2.2
depth (m) 20.0
depth_lower (m) 20.0
depth_upper (m) 20.0
description MiSeq data package
dilution_used neat
download Replaces BPAOPS-1572
env_broad_scale 7 Other
env_local_scale 7.2.1 Open ocean water-conservation
env_medium Sea water [ENVO_00002149]
flow_id LHPV7
folder_name 240219_AM_18S_UNSW_LHPV7
funding_agency IMOS|CSIRO
general_env_feature Marine - neritic (coastal off shore)
geo_loc_name Australia:Eastern Indian Ocean coastal waters of Western Australia [GAZ_00051147]
imos_site_code NRSROT
index AAGAGGCA-CCTAGAGT
lat_lon (decimal_degrees) -32.0 115.4167
latitude (decimal_degrees) -32.0
longitude (decimal_degrees) 115.4167
nitrate (μmol/L) 1e-10
nitrate_meth meth_2.2
nitrite (μmol/L) 1e-10
nitrite_meth meth_2.2
nrs_sample_code ROT20231024_20
nrs_trip_code ROT20231024
nucl_acid_ext meth_3.1.9
omics Genomics
oxygen (μmol/L) 234.5
oxygen_ctd_vol (mL/L) -2387.0
oxygen_ctd_vol_meth meth_2.2
oxygen_meth meth_2.2
pass_fail P
phosphate (μmol/L) 0.11
phosphate_meth meth_2.2
picoeukaryotes (cells/mL) 23097.5
picoeukaryotes_meth meth_2.2
prochlorococcus (cells/mL) 4365.5
prochlorococcus_meth meth_2.2
reads 99542.0
salinity (PSU) 35.5534
salinity_lab (PSU) 35.553
salinity_lab_meth meth_2.2
salinity_meth meth_2.2
samp_collect_device meth_1.4
samp_mat_process meth_1.4
sample_attribution IMOS|CSIRO
sample_database_file AM_db_v4.2_202410080900.db
sample_id 102.100.100/403670
sample_metadata_ingest_date 2024-02-09 12:24:08
sample_metadata_ingest_file AODN_AM_NRS_202402081638_GOLD_xlsx
sample_metadata_update_history AODN_AM_NRS_202406191253_FullREPLACE_xlsx
sample_site_location_description Rottnest Island
sample_submitter Jodie van de Kamp [https://orcid.org/0000-0003-2167-0938]
sample_type Pelagic
secchi_depth (m) 15.5
secchi_depth_meth meth_2.2
sequencing_facility Ramaciotti
silicate (μmol/L) 1.6
silicate_meth meth_2.2
source_mat_id 102.100.100/403670
store_cond meth_1.4
synechococcus (cells/mL) 56358.5
synechococcus_meth meth_2.2
target 18S
temp (degC) 19.2814
temp_meth meth_2.2
ticket BPAOPS-1587
turbidity (NTU) 0.478
turbidity_meth meth_2.2
url https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/403670
utc_date_sampled 2023-10-24
utc_time_sampled 00:50:00
zooplankton_biomass (mg/m3) 10.884
zooplankton_biomass_meth meth_2.2int