Australian Microbiome Amplicons 18S 102.100.100/403660 LHPV7

Yongala, 18S MiSeq

Dataset size is: 12.48 MiB

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This data is made available openly under a Creative Commons Attribution license. Please see the initiative Data Policy for attribution information.

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Field Value
Geospatial Coverage

Dataset extent

Map tiles & Data by OpenStreetMap, under CC BY SA.
Resource Permissions organization_member_after_embargo:date_of_transfer_to_archive:90:am-consortium-members
Access Control Date 2024-08-13
Access Control Mode date
Sequence Data Type illumina-amplicons
allo (mg/m3) 1e-10
allo_meth meth_2.2
alpha_beta_car (mg/m3) 0.008
alpha_beta_car_meth meth_2.2
am_environment Marine
ammonium (μmol/L) 1e-10
ammonium_meth meth_2.2
amplicon 18S
analysis_software Local Run Manager
analysis_software_version 4.1.0
analytical_platform MiSeq
anth (mg/m3) 1e-10
anth_meth meth_2.2
asta (mg/m3) 1e-10
asta_meth meth_2.2
base_url https://downloads-qcif.bioplatforms.com/bpa/amd/amplicons-miseq/18s/BPAOPS-1587/240219_AM_18S_UNSW_LHPV7/
biotic_relationship Free-living
but_fuco (mg/m3) 0.01
but_fuco_meth meth_2.2
cantha (mg/m3) 1e-10
cantha_meth meth_2.2
ccg_jira_ticket BPAOPS-1587
chlorophyll_a (mg/m3) 0.124
chlorophyll_a_meth meth_2.2
chlorophyll_b (mg/m3) 0.006
chlorophyll_b_meth meth_2.2
chlorophyll_c1 (mg/m3) 1e-10
chlorophyll_c1_meth meth_2.2
chlorophyll_c2 (mg/m3) 0.015
chlorophyll_c2_meth meth_2.2
chlorophyll_c3 (mg/m3) 0.011
chlorophyll_c3_meth meth_2.2
chlorophyll_ctd (mg/m3) 0.0497
chlorophyll_ctd_meth meth_2.2
collection_date 2023-08-05T21:33:00
comments 403660_18S_LHPV7_CGAGGCTG-CCTAGAGT
conductivity_aqueous (S/m) 5.1241
conductivity_aqueous_meth meth_2.2
cphlide_a (mg/m3) 0.003
cphlide_a_meth meth_2.2
data_type 18S
database_schema_definitions_url https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx
date_of_transfer 2024-05-15
date_of_transfer_to_archive 2024-05-16
density (kg/m3) 1024.0109
density_meth meth_2.2
depth (m) 26.0
depth_lower (m) 26.0
depth_upper (m) 26.0
description MiSeq data package
diadino (mg/m3) 0.004
diadino_meth meth_2.2
diato (mg/m3) 1e-10
diato_meth meth_2.2
dilution_used neat
dino (mg/m3) 1e-10
dino_meth meth_2.2
download Replaces BPAOPS-1572
dv_cphl_a (mg/m3) 0.019
dv_cphl_a_and_cphl_a (mg/m3) 0.143
dv_cphl_a_and_cphl_a_meth meth_2.2
dv_cphl_a_meth meth_2.2
dv_cphl_b (mg/m3) 1e-10
dv_cphl_b_and_cphl_b (mg/m3) 0.006
dv_cphl_b_and_cphl_b_meth meth_2.2
dv_cphl_b_meth meth_2.2
echin (mg/m3) 1e-10
echin_meth meth_2.2
env_broad_scale 7 Other
env_local_scale 7.2.1 Open ocean water-conservation
env_medium Sea water [ENVO_00002149]
flow_id LHPV7
folder_name 240219_AM_18S_UNSW_LHPV7
fuco (mg/m3) 0.013
fuco_meth meth_2.2
funding_agency IMOS|CSIRO
general_env_feature Marine - neritic (coastal off shore)
geo_loc_name Australia:Great Barrier Reef Marine Park [GAZ_00049080]
gyro (mg/m3) 1e-10
gyro_meth meth_2.2
hex_fuco (mg/m3) 0.027
hex_fuco_meth meth_2.2
imos_site_code NRSYON
index CGAGGCTG-CCTAGAGT
keto_hex_fuco (mg/m3) 1e-10
keto_hex_fuco_meth meth_2.2
lat_lon (decimal_degrees) -19.3085 147.6184
latitude (decimal_degrees) -19.3085
longitude (decimal_degrees) 147.6184
lut (mg/m3) 1e-10
lut_meth meth_2.2
mg_dvp (mg/m3) 1e-10
mg_dvp_meth meth_2.2
neo (mg/m3) 0.001
neo_meth meth_2.2
nitrate (μmol/L) 1e-10
nitrate_meth meth_2.2
nitrite (μmol/L) 1e-10
nitrite_meth meth_2.2
nrs_sample_code YON20230805_26
nrs_trip_code YON20230805
nucl_acid_ext meth_3.1.9
omics Genomics
pass_fail P
perid (mg/m3) 0.002
perid_meth meth_2.2
phide_a (mg/m3) 1e-10
phide_a_meth meth_2.2
phosphate (μmol/L) 0.12
phosphate_meth meth_2.2
phytin_a (mg/m3) 1e-10
phytin_a_meth meth_2.2
phytin_b (mg/m3) 1e-10
phytin_b_meth meth_2.2
picoeukaryotes (cells/mL) 5846.0
picoeukaryotes_meth meth_2.2
pras (mg/m3) 0.001
pras_meth meth_2.2
prochlorococcus (cells/mL) 17716.0
prochlorococcus_meth meth_2.2
pyrophide_a (mg/m3) 1e-10
pyrophide_a_meth meth_2.2
pyrophytin_a (mg/m3) 1e-10
pyrophytin_a_meth meth_2.2
reads 39463.0
salinity (PSU) 35.0314
salinity_lab (PSU) 35.029
salinity_lab_meth meth_2.2
salinity_meth meth_2.2
samp_collect_device meth_1.4
samp_mat_process meth_1.4
sample_attribution IMOS|CSIRO
sample_database_file AM_db_v4.2_202408091431.db
sample_id 102.100.100/403660
sample_metadata_ingest_date 2024-02-09 12:24:08
sample_metadata_ingest_file AODN_AM_NRS_202402081638_GOLD_xlsx
sample_metadata_update_history AODN_AM_NRS_202404030929_FullREPLACE_xlsx;AODN_AM_NRS_202406191253_FullREPLACE_xlsx
sample_site_location_description Yongala
sample_submitter Jodie van de Kamp [https://orcid.org/0000-0003-2167-0938]
sample_type Pelagic
secchi_depth (m) 7.0
secchi_depth_meth meth_2.2
sequencing_facility Ramaciotti
silicate (μmol/L) 1.2
silicate_meth meth_2.2
source_mat_id 102.100.100/403660
store_cond meth_1.4
synechococcus (cells/mL) 54829.5
synechococcus_meth meth_2.2
target 18S
temp (degC) 23.1898
temp_meth meth_2.2
ticket BPAOPS-1587
url https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/403660
utc_date_sampled 2023-08-05
utc_time_sampled 21:33:00
viola (mg/m3) 0.001
viola_meth meth_2.2
zea (mg/m3) 0.027
zea_meth meth_2.2
zooplankton_biomass (mg/m3) 17.5184
zooplankton_biomass_meth meth_2.2int