Australian Microbiome Amplicons 18S 102.100.100/403640 LHPV7

Maria Island, 18S MiSeq

Dataset size is: 11.48 MiB

Log in or Register to access resource
 
 

 

Data and Resources

Please see the initiative Data Policy for attribution information.

Additional Info Show Blank Fields

Field Value
Geospatial Coverage

Dataset extent

Map tiles & Data by OpenStreetMap, under CC BY SA.
Resource Permissions organization_member_after_embargo:date_of_transfer_to_archive:90:am-consortium-members
Access Control Date 2024-08-13
Access Control Mode date
Sequence Data Type illumina-amplicons
allo (mg/m3) 0.019
allo_meth meth_2.2
alpha_beta_car (mg/m3) 0.015
alpha_beta_car_meth meth_2.2
am_environment Marine
ammonium (μmol/L) 0.06
ammonium_meth meth_2.2
amplicon 18S
analysis_software Local Run Manager
analysis_software_version 4.1.0
analytical_platform MiSeq
anth (mg/m3) 1e-10
anth_meth meth_2.2
asta (mg/m3) 1e-10
asta_meth meth_2.2
base_url https://downloads-qcif.bioplatforms.com/bpa/amd/amplicons-miseq/18s/BPAOPS-1587/240219_AM_18S_UNSW_LHPV7/
biotic_relationship Free-living
but_fuco (mg/m3) 0.038
but_fuco_meth meth_2.2
cantha (mg/m3) 1e-10
cantha_meth meth_2.2
ccg_jira_ticket BPAOPS-1587
chlorophyll_a (mg/m3) 0.5
chlorophyll_a_meth meth_2.2
chlorophyll_b (mg/m3) 0.082
chlorophyll_b_meth meth_2.2
chlorophyll_c1 (mg/m3) 1e-10
chlorophyll_c1_meth meth_2.2
chlorophyll_c2 (mg/m3) 0.097
chlorophyll_c2_meth meth_2.2
chlorophyll_c3 (mg/m3) 0.051
chlorophyll_c3_meth meth_2.2
chlorophyll_ctd (mg/m3) 1.0232
chlorophyll_ctd_meth meth_2.2
collection_date 2023-05-11T00:05:00
comments 403640_18S_LHPV7_TAGGCATG-CTATTAAG
conductivity_aqueous (S/m) 4.359
conductivity_aqueous_meth meth_2.2
cphlide_a (mg/m3) 0.084
cphlide_a_meth meth_2.2
data_type 18S
database_schema_definitions_url https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx
date_of_transfer 2024-05-15
date_of_transfer_to_archive 2024-05-16
density (kg/m3) 1026.3804
density_meth meth_2.2
depth (m) 20.0
depth_lower (m) 20.0
depth_upper (m) 20.0
description MiSeq data package
diadino (mg/m3) 0.029
diadino_meth meth_2.2
diato (mg/m3) 1e-10
diato_meth meth_2.2
dilution_used neat
dino (mg/m3) 1e-10
dino_meth meth_2.2
download Replaces BPAOPS-1572
dv_cphl_a (mg/m3) 1e-10
dv_cphl_a_and_cphl_a (mg/m3) 0.5
dv_cphl_a_and_cphl_a_meth meth_2.2
dv_cphl_a_meth meth_2.2
dv_cphl_b (mg/m3) 1e-10
dv_cphl_b_and_cphl_b (mg/m3) 0.082
dv_cphl_b_and_cphl_b_meth meth_2.2
dv_cphl_b_meth meth_2.2
echin (mg/m3) 1e-10
echin_meth meth_2.2
env_broad_scale 7 Other
env_local_scale 7.2.1 Open ocean water-conservation
env_medium Sea water [ENVO_00002149]
flow_id LHPV7
folder_name 240219_AM_18S_UNSW_LHPV7
fuco (mg/m3) 0.091
fuco_meth meth_2.2
funding_agency IMOS|CSIRO
general_env_feature Marine - neritic (coastal off shore)
geo_loc_name Australia:Tasman Sea coastal waters of continental Australia [GAZ:00143737]
gyro (mg/m3) 1e-10
gyro_meth meth_2.2
hex_fuco (mg/m3) 0.111
hex_fuco_meth meth_2.2
imos_site_code NRSMAI
index TAGGCATG-CTATTAAG
keto_hex_fuco (mg/m3) 1e-10
keto_hex_fuco_meth meth_2.2
lat_lon (decimal_degrees) -42.5967 148.2333
latitude (decimal_degrees) -42.5967
longitude (decimal_degrees) 148.2333
lut (mg/m3) 1e-10
lut_meth meth_2.2
mg_dvp (mg/m3) 1e-10
mg_dvp_meth meth_2.2
neo (mg/m3) 0.013
neo_meth meth_2.2
nitrate (μmol/L) 1.8
nitrate_meth meth_2.2
nitrite (μmol/L) 0.6
nitrite_meth meth_2.2
nrs_sample_code MAI20230511_20
nrs_trip_code MAI20230511
nucl_acid_ext meth_3.1.9
omics Genomics
oxygen (μmol/L) 246.0
oxygen_ctd_vol (mL/L) 222.3426
oxygen_ctd_vol_meth meth_2.2
oxygen_meth meth_2.2
pass_fail P
perid (mg/m3) 0.027
perid_meth meth_2.2
phide_a (mg/m3) 1e-10
phide_a_meth meth_2.2
phosphate (μmol/L) 0.25
phosphate_meth meth_2.2
phytin_a (mg/m3) 1e-10
phytin_a_meth meth_2.2
phytin_b (mg/m3) 1e-10
phytin_b_meth meth_2.2
picoeukaryotes (cells/mL) 13926.5
picoeukaryotes_meth meth_2.2
pras (mg/m3) 0.029
pras_meth meth_2.2
prochlorococcus (cells/mL) 1551.0
prochlorococcus_meth meth_2.2
pyrophide_a (mg/m3) 1e-10
pyrophide_a_meth meth_2.2
pyrophytin_a (mg/m3) 1e-10
pyrophytin_a_meth meth_2.2
reads 34460.0
salinity (PSU) 35.4606
salinity_lab (PSU) 35.472
salinity_lab_meth meth_2.2
salinity_meth meth_2.2
samp_collect_device meth_1.4
samp_mat_process meth_1.4
sample_attribution IMOS|CSIRO
sample_database_file AM_db_v4.2_202402091224.db
sample_id 102.100.100/403640
sample_metadata_ingest_date 2024-02-09 12:24:08
sample_metadata_ingest_file AODN_AM_NRS_202402081638_GOLD_xlsx
sample_site_location_description Maria Island
sample_submitter Jodie van de Kamp [https://orcid.org/0000-0003-2167-0938]
sample_type Pelagic
secchi_depth (m) 18.0
secchi_depth_meth meth_2.2
sequencing_facility Ramaciotti
silicate (μmol/L) 0.9
silicate_meth meth_2.2
source_mat_id 102.100.100/403640
store_cond meth_1.4
synechococcus (cells/mL) 9240.0
synechococcus_meth meth_2.2
target 18S
temp (degC) 15.1595
temp_meth meth_2.2
ticket BPAOPS-1587
turbidity (NTU) 1.2267
turbidity_meth meth_2.2
url https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/403640
utc_date_sampled 2023-05-11
utc_time_sampled 00:05:00
viola (mg/m3) 0.008
viola_meth meth_2.2
zea (mg/m3) 0.004
zea_meth meth_2.2
zooplankton_biomass (mg/m3) 2.1831
zooplankton_biomass_meth meth_2.2int