Australian Microbiome Amplicons 18S 102.100.100/403532 LWL77
Dataset size is: 44.32 MiB
This dataset is currently under a short embargo period until May 26, 2025 to enable primary access by research partners.
If you would like access during this period please contact us here or contact the project lead directly (see details in the table below) for collaboration opportunities.
Data and Resources
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:90:am-consortium-members |
| Access Control Date | 2025-05-26 |
| Access Control Mode | date |
| Sequence Data Type | illumina-amplicons |
| absorbance_260_280_ratio_submitter | -9999.0 |
| alkalinity (μmol/kg) | -9999.0 |
| am_environment | Marine |
| ammonium (μmol/L) | -9999.0 |
| amplicon | 18S |
| analysis_software | Local Run Manager |
| analysis_software_version | 4.1.0 |
| analytical_platform | MiSeq |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/amd/amplicons-miseq/18s/BPAOPS-1758/20250217_AM_18S_UNSW_LWL77/ |
| biotic_relationship | Free-living |
| ccg_jira_ticket | BPAOPS-1758 |
| chlorophyll_a (mg/m3) | -9999.0 |
| chlorophyll_ctd (mg/m3) | -9999.0 |
| collection_date | 2024-04-18T00:01:00 |
| comments | 403532_18S_LWL77_TAAGGCGA-GTAAGGAG |
| conductivity_aqueous (S/m) | -9999.0 |
| data_type | 18S |
| database_schema_definitions_url | https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx |
| date_of_transfer | 2025-02-25 |
| date_of_transfer_to_archive | 2025-02-25 |
| depth (m) | 2.0 |
| depth_lower (m) | 2.0 |
| depth_upper (m) | 2.0 |
| description | MiSeq data package |
| dilution_used | Neat |
| dna_concentration_submitter (ng/μL) | -9999.0 |
| env_broad_scale | 7 Other |
| env_local_scale | 7.1.3 Coastal water-intensive use |
| env_medium | Sea water [ENVO_00002149] |
| flow_id | LWL77 |
| fluor (AU) | -9999.0 |
| folder_name | 20250217_AM_18S_UNSW_LWL77 |
| funding_agency | UTS; CRC food agility; CSIRO; IMOS |
| general_env_feature | Marine - neritic (coastal off shore) |
| geo_loc_name | Australia:Botany Bay [GAZ_00002797] |
| imos_site_code | CSTRP |
| index | TAAGGCGA-GTAAGGAG |
| lat_lon (decimal_degrees) | -34.0068 151.1921 |
| latitude (decimal_degrees) | -34.0068 |
| longitude (decimal_degrees) | 151.1921 |
| microbial_abundance (cells/mL) | -9999.0 |
| nitrate (μmol/L) | -9999.0 |
| nitrate_nitrite (μmol/L) | -9999.0 |
| nitrite (μmol/L) | -9999.0 |
| nucl_acid_ext | meth_3.1.9 |
| omics | Genomics |
| oxygen (μmol/L) | -9999.0 |
| par (μmol/m2/s) | -9999.0 |
| part_org_carb (μmol/L) | -9999.0 |
| pass_fail | P |
| ph | -9999.0 |
| phosphate (μmol/L) | -9999.0 |
| picoeukaryotes (cells/mL) | -9999.0 |
| prochlorococcus (cells/mL) | -9999.0 |
| reads | 135664.0 |
| salinity (PSU) | -9999.0 |
| salinity_lab (PSU) | -9999.0 |
| samp_collect_device | meth_1.5.1 |
| samp_mat_process | meth_1.5.1 |
| samp_size (L) | 1.96 |
| samp_vol_we_dna_ext (L) | 1.96 |
| sample_attribution | UTS; CRC food agility; CSIRO; IMOS |
| sample_database_file | AM_db_v4.2_202412051535.db |
| sample_id | 102.100.100/403532 |
| sample_metadata_ingest_date | 2024-07-05 13:29:16 |
| sample_metadata_ingest_file | CoastalMAP_ALL_epasd_GOLDupdated05072024_FullREPLACE_xlsx |
| sample_site_location_description | Towra Point - Botany Bay |
| sample_submitter | Shauna Murray[Shauna.Murray@uts.edu.au;https://orcid.org/0000-0001-7096-1307] |
| sample_type | Coastal water |
| sample_volume_notes | Other - Filters were clogged |
| secchi_depth (m) | -9999.0 |
| sequencing_facility | Ramaciotti |
| silicate (μmol/L) | -9999.0 |
| source_mat_id | 102.100.100/403532 |
| store_cond | meth_1.5.1 |
| synechococcus (cells/mL) | -9999.0 |
| target | 18S |
| temp (degC) | -9999.0 |
| ticket | BPAOPS-1758 |
| tot_depth_water_col (m) | -9999.0 |
| tot_nitro (%) | -9999.0 |
| tot_phosp (%) | -9999.0 |
| transmittance (%) | -9999.0 |
| tss (mg/L) | -9999.0 |
| turbidity (NTU) | -9999.0 |
| url | https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/403532 |
| utc_date_sampled | 2024-04-18 |
| utc_time_sampled | 00:01:00 |