Australian Microbiome Amplicons 18S 102.100.100/400845 KGNV9
Dataset size is: 45.37 MiB
Data and Resources
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Additional Info Show Blank Fields
Field | Value |
---|---|
Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:90:am-consortium-members |
Access Control Date | 2022-09-19 |
Access Control Mode | date |
Sequence Data Type | illumina-amplicons |
Related Data | doi:10.25953/z3tc-a185 |
alkalinity (μmol/kg) | 2321.76 |
alkalinity_meth | meth_2.2 |
am_environment | Marine |
ammonium (μmol/L) | 0.06 |
ammonium_meth | meth_2.2 |
amplicon | 18S |
analysis_software | MiSeq Reporter |
analysis_software_version | 2.6.2.3 |
analytical_platform | MiSeq |
base_url | https://downloads-qcif.bioplatforms.com/bpa/amd/amplicons-miseq/18s/BPAOPS-1286/ |
bioplatforms_dataset_id | 102.100.100/401949 |
bioplatforms_project | Australian Microbiome Initiative (AM) |
bioplatforms_project_code | AM_NRS |
biotic_relationship | Free-living |
ccg_jira_ticket | BPAOPS-1286 |
collection_date | 2021-12-14T22:35:00 |
comments | 400845_18S_KGNV9_AAGAGGCA-TTATGCGA |
data_type | 18S |
database_schema_definitions_url | https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx |
dataset_id | 102.100.100/401949 |
date_of_transfer | 2022-06-21 |
date_of_transfer_to_archive | 2022-06-22 |
depth (m) | 85.0 |
depth_lower (m) | 85.0 |
depth_upper (m) | 85.0 |
description | MiSeq data package |
dilution_used | Neat |
env_broad_scale | 7 Other |
env_local_scale | 7.2.1 Open ocean water-conservation |
env_medium | Sea water [ENVO_00002149] |
flow_id | KGNV9 |
folder_name | 20220621_AM_18S_UNSW_KGNV9 |
funding_agency | IMOS|CSIRO |
general_env_feature | Marine - neritic (coastal off shore) |
geo_loc_name | Australia:Tasman Sea coastal waters of continental Australia [GAZ_00143737] |
imos_site_code | NRSMAI |
index | AAGAGGCA-TTATGCGA |
lat_lon (decimal_degrees) | -42.5967 148.2333 |
latitude (decimal_degrees) | -42.5967 |
longitude (decimal_degrees) | 148.2333 |
nitrate (μmol/L) | 8.5 |
nitrate_meth | meth_2.2 |
nitrite (μmol/L) | 0.32 |
nitrite_meth | meth_2.2 |
nrs_sample_code | MAI20211214_85 |
nrs_trip_code | MAI20211214 |
nucl_acid_ext | meth_3.1.9 |
omics | Genomics |
oxygen (μmol/L) | 223.8 |
oxygen_meth | meth_2.2 |
pass_fail | P |
pcr_plate_name | HOL10527-HOL10526_18S4_setC |
phosphate (μmol/L) | 0.67 |
phosphate_meth | meth_2.2 |
picoeukaryotes (cells/mL) | 9374.0 |
picoeukaryotes_meth | meth_2.2 |
prochlorococcus (cells/mL) | 637.5 |
prochlorococcus_meth | meth_2.2 |
reads | 134796.0 |
salinity_lab (PSU) | 35.275 |
salinity_lab_meth | meth_2.2 |
samp_collect_device | meth_1.4 |
samp_mat_process | meth_1.4 |
samp_size (L) | 2.0 |
samp_vol_we_dna_ext (L) | 2.0 |
sample_attribution | IMOS|CSIRO |
sample_database_file | AM_db_v4.2_202408091431.db |
sample_id | 102.100.100/400845 |
sample_metadata_ingest_date | 2022-11-29 17:13:14 |
sample_metadata_ingest_file | AODN_AM_NRS_ALL_to_SEP2022_202211291332_GOLD_FullREPLACE_xlsx |
sample_site_location_description | Maria Island |
sample_submitter | Jodie van de Kamp [https://orcid.org/0000-0003-2167-0938] |
sample_type | Pelagic |
secchi_depth (m) | 13.0 |
secchi_depth_meth | meth_2.2 |
sequencing_facility | Ramaciotti |
silicate (μmol/L) | 3.1 |
silicate_meth | meth_2.2 |
source_mat_id | 102.100.100/400845 |
store_cond | meth_1.4 |
synechococcus (cells/mL) | 7637.5 |
synechococcus_meth | meth_2.2 |
target | 18S |
ticket | BPAOPS-1286 |
total_co2 (μmol/kg) | 2121.01 |
total_co2_meth | meth_2.2 |
url | https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/400845 |
utc_date_sampled | 2021-12-14 |
utc_time_sampled | 22:35:00 |
zooplankton_biomass (mg/m3) | 26.579 |
zooplankton_biomass_meth | meth_2.2int |