Australian Microbiome Amplicons 18S 102.100.100/400569 LHPV7
Dataset size is: 33.26 MiB
This dataset is currently under a short embargo period until August 13, 2024 to enable primary access by research partners.
If you would like access during this period please contact us here or contact the project lead directly (see details in the table below) for collaboration opportunities.
Data and Resources
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:90:am-consortium-members |
| Access Control Date | 2024-08-13 |
| Access Control Mode | date |
| Sequence Data Type | illumina-amplicons |
| Related Data | doi:10.25953/bh2s-3d51 |
| am_environment | Marine |
| amplicon | 18S |
| analysis_software | Local Run Manager |
| analysis_software_version | 4.1.0 |
| analytical_platform | MiSeq |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/amd/amplicons-miseq/18s/BPAOPS-1587/240219_AM_18S_UNSW_LHPV7/ |
| bioplatforms_dataset_id | 102.100.100/401915 |
| bioplatforms_project | Australian Microbiome Initiative (AM) |
| bioplatforms_project_code | AM0001 |
| biotic_relationship | Free-living |
| ccg_jira_ticket | BPAOPS-1587 |
| coastal_id | WQQ782_D0 |
| collection_date | 2023-06-22T03:12:00 |
| comments | 400569_18S_LHPV7_TACGCTGC-CTATTAAG |
| data_type | 18S |
| database_schema_definitions_url | https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx |
| dataset_id | 102.100.100/401915 |
| date_of_transfer | 2024-05-15 |
| date_of_transfer_to_archive | 2024-05-16 |
| depth (m) | 0.0 |
| depth_lower (m) | 0.0 |
| depth_upper (m) | 0.0 |
| description | MiSeq data package |
| dilution_used | neat |
| download | Replaces BPAOPS-1572 |
| env_broad_scale | Coastal water |
| env_local_scale | 7.1.2 Coastal water-production |
| env_medium | Sea water [ENVO_00002149] |
| flow_id | LHPV7 |
| folder_name | 240219_AM_18S_UNSW_LHPV7 |
| funding_agency | AIMS; CSIRO; IMOS |
| general_env_feature | Marine - neritic (coastal off shore) |
| geo_loc_name | Australia:Great Barrier Reef [GAZ:00009717] |
| index | TACGCTGC-CTATTAAG |
| lat_lon (decimal_degrees) | -16.66293 145.7093 |
| latitude (decimal_degrees) | -16.66293 |
| longitude (decimal_degrees) | 145.7093 |
| nucl_acid_ext | meth_3.1.9 |
| omics | Genomics |
| pass_fail | P |
| reads | 106091.0 |
| samp_collect_device | meth_1.5.2 |
| samp_mat_process | meth_1.5.2 |
| samp_size (L) | 2.0 |
| samp_vol_we_dna_ext (L) | 2.0 |
| sample_attribution | Great Barrier Reef Marine Monitoring Program for Inshore Water Quality; CSIRO; IMOS |
| sample_database_file | AM_db_v4.2_202402091224.db |
| sample_id | 102.100.100/400569 |
| sample_metadata_ingest_date | 2023-12-12 13:58:07 |
| sample_metadata_ingest_file | Sample_Submission_sheet_20230411_schema_v3_vocab_3_0_0_GBR_Y1Y2Y3_FullREPLACE_FullREPLACE_FullREPLACE_FullREPLACE_xlsx |
| sample_site_location_description | Double Island |
| sample_submitter | AIMS - David Bourne (d.bourne@aims.gov.au); Renee Gruber (r.gruber@aims.gov.au) |
| sample_type | Coastal water |
| sequencing_facility | Ramaciotti |
| source_mat_id | 102.100.100/400569 |
| store_cond | meth_1.5.2 |
| target | 18S |
| ticket | BPAOPS-1587 |
| url | https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/400569 |
| utc_date_sampled | 2023-06-22 |
| utc_time_sampled | 03:12:00 |