Australian Microbiome Amplicons 16S 102.100.100/403823 LW7D6
Dataset size is: 62.94 MiB
This dataset is currently under a short embargo period until May 27, 2025 to enable primary access by research partners.
If you would like access during this period please contact us here or contact the project lead directly (see details in the table below) for collaboration opportunities.
Data and Resources
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:90:am-consortium-members |
| Access Control Date | 2025-05-27 |
| Access Control Mode | date |
| Sequence Data Type | illumina-amplicons |
| absorbance_260_280_ratio_submitter | -9999.0 |
| alkalinity (μmol/kg) | -9999.0 |
| am_environment | Marine |
| ammonium (μmol/L) | -9999.0 |
| amplicon | 16S |
| analysis_software | Local Run Manager |
| analysis_software_version | 4.1.0 |
| analytical_platform | MiSeq |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/amd/amplicons-miseq/16s/BPAOPS-1759/20250221_AM_16S_UNSW_LW7D6/ |
| biotic_relationship | Free-living |
| ccg_jira_ticket | BPAOPS-1759 |
| chlorophyll_a (mg/m3) | -9999.0 |
| chlorophyll_ctd (mg/m3) | -9999.0 |
| coastal_id | WQQ982_D1 |
| comments | 403823_16S_LW7D6_TGAGTCAC-TCTACACT |
| conductivity_aqueous (S/m) | -9999.0 |
| data_type | 16S |
| database_schema_definitions_url | https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx |
| date_of_transfer | 2025-02-26 |
| date_of_transfer_to_archive | 2025-02-26 |
| depth (m) | 16.0 |
| depth_lower (m) | 16.0 |
| depth_upper (m) | 16.0 |
| description | MiSeq data package |
| dilution_used | Neat |
| dna_concentration_submitter (ng/μL) | -9999.0 |
| env_broad_scale | 7 Other |
| env_local_scale | 7.1.2 Coastal water-production |
| env_medium | Sea water [ENVO_00002149] |
| flow_id | LW7D6 |
| fluor (AU) | -9999.0 |
| folder_name | 20250221_AM_16S_UNSW_LW7D6 |
| funding_agency | AIMS; CSIRO; IMOS |
| general_env_feature | Marine - neritic (coastal off shore) |
| geo_loc_name | Australia:Great Barrier Reef [GAZ_00009717] |
| imos_site_code | CSDBI |
| index | TGAGTCAC-TCTACACT |
| lat_lon (decimal_degrees) | -16.6633 145.7067 |
| latitude (decimal_degrees) | -16.6633 |
| longitude (decimal_degrees) | 145.7067 |
| microbial_abundance (cells/mL) | -9999.0 |
| nitrate (μmol/L) | -9999.0 |
| nitrate_nitrite (μmol/L) | -9999.0 |
| nitrite (μmol/L) | -9999.0 |
| nucl_acid_ext | meth_3.1.9 |
| omics | Genomics |
| oxygen (μmol/L) | -9999.0 |
| par (μmol/m2/s) | -9999.0 |
| part_org_carb (μmol/L) | -9999.0 |
| pass_fail | P |
| ph | -9999.0 |
| phosphate (μmol/L) | -9999.0 |
| picoeukaryotes (cells/mL) | -9999.0 |
| prochlorococcus (cells/mL) | -9999.0 |
| reads | 147708.0 |
| salinity (PSU) | -9999.0 |
| salinity_lab (PSU) | -9999.0 |
| samp_collect_device | meth_1.5.2 |
| samp_mat_process | meth_1.5.2 |
| samp_size (L) | 2.0 |
| samp_vol_we_dna_ext (L) | 2.0 |
| sample_attribution | Great Barrier Reef Marine Monitoring Program for Inshore Water Quality; CSIRO; IMOS |
| sample_database_file | AM_db_v4.2_202412051535.db |
| sample_id | 102.100.100/403823 |
| sample_metadata_ingest_date | 2024-07-05 13:29:16 |
| sample_metadata_ingest_file | CoastalMAP_ALL_epasd_GOLDupdated05072024_FullREPLACE_xlsx |
| sample_site_location_description | Double Island |
| sample_submitter | Yun Kit Yeoh[y.yeoh@aims.gov.au;https://orcid.org/0000-0003-0241-6117]|David G. Bourne[david.bourne@jcu.edu.au;https://orcid.org/0000-0002-1492-8710] |
| sample_type | Coastal water |
| secchi_depth (m) | -9999.0 |
| sequencing_facility | Ramaciotti |
| silicate (μmol/L) | -9999.0 |
| source_mat_id | 102.100.100/403823 |
| store_cond | meth_1.5.2 |
| synechococcus (cells/mL) | -9999.0 |
| target | 16S |
| temp (degC) | -9999.0 |
| ticket | BPAOPS-1759 |
| tot_depth_water_col (m) | -9999.0 |
| tot_nitro (%) | -9999.0 |
| tot_phosp (%) | -9999.0 |
| transmittance (%) | -9999.0 |
| tss (mg/L) | -9999.0 |
| turbidity (NTU) | -9999.0 |
| url | https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/403823 |