Australian Microbiome Amplicons 16S 102.100.100/403643 LHMB9
Dataset size is: 42.06 MiB
This dataset is currently under a short embargo period until August 13, 2024 to enable primary access by research partners.
If you would like access during this period please contact us here or contact the project lead directly (see details in the table below) for collaboration opportunities.
Data and Resources
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:90:am-consortium-members |
| Access Control Date | 2024-08-13 |
| Access Control Mode | date |
| Sequence Data Type | illumina-amplicons |
| am_environment | Marine |
| ammonium (μmol/L) | 1e-10 |
| ammonium_meth | meth_2.2 |
| amplicon | 16S |
| analysis_software | Local Run Manager |
| analysis_software_version | 4.1.0 |
| analytical_platform | MiSeq |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/amd/amplicons-miseq/16s/BPAOPS-1589/240216_AM_16S_UNSW_LHMB9/ |
| biotic_relationship | Free-living |
| ccg_jira_ticket | BPAOPS-1589 |
| chlorophyll_ctd (mg/m3) | 0.7778 |
| chlorophyll_ctd_meth | meth_2.2 |
| collection_date | 2023-06-13T00:34:00 |
| comments | 403643_16S_LHMB9_GTCAATTG-AAGCAGCA |
| conductivity_aqueous (S/m) | 4.2241 |
| conductivity_aqueous_meth | meth_2.2 |
| data_type | 16S |
| database_schema_definitions_url | https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx |
| date_of_transfer | 2024-05-15 |
| date_of_transfer_to_archive | 2024-05-16 |
| density (kg/m3) | 1026.5171 |
| density_meth | meth_2.2 |
| depth (m) | 0.0 |
| depth_lower (m) | 0.0 |
| depth_upper (m) | 0.0 |
| description | MiSeq data package |
| dilution_used | 2x |
| download | Replaces BPAOPS-1569 |
| env_broad_scale | 7 Other |
| env_local_scale | 7.2.1 Open ocean water-conservation |
| env_medium | Sea water [ENVO_00002149] |
| flow_id | LHMB9 |
| folder_name | 240216_AM_16S_UNSW_LHMB9 |
| funding_agency | IMOS|CSIRO |
| general_env_feature | Marine - neritic (coastal off shore) |
| geo_loc_name | Australia:Tasman Sea coastal waters of continental Australia [GAZ:00143737] |
| imos_site_code | NRSMAI |
| index | GTCAATTG-AAGCAGCA |
| lat_lon (decimal_degrees) | -42.5967 148.2333 |
| latitude (decimal_degrees) | -42.5967 |
| longitude (decimal_degrees) | 148.2333 |
| nitrate (μmol/L) | 2.2 |
| nitrate_meth | meth_2.2 |
| nitrite (μmol/L) | 0.18 |
| nitrite_meth | meth_2.2 |
| nrs_sample_code | MAI20230613_0 |
| nrs_trip_code | MAI20230613 |
| nucl_acid_ext | meth_3.1.9 |
| omics | Genomics |
| oxygen (μmol/L) | 255.5 |
| oxygen_ctd_vol (mL/L) | 229.4133 |
| oxygen_ctd_vol_meth | meth_2.2 |
| oxygen_meth | meth_2.2 |
| pass_fail | P |
| phosphate (μmol/L) | 0.3 |
| phosphate_meth | meth_2.2 |
| picoeukaryotes (cells/mL) | 13469.0 |
| picoeukaryotes_meth | meth_2.2 |
| prochlorococcus (cells/mL) | 3980.5 |
| prochlorococcus_meth | meth_2.2 |
| reads | 92591.0 |
| salinity (PSU) | 35.3895 |
| salinity_lab (PSU) | 35.41 |
| salinity_lab_meth | meth_2.2 |
| salinity_meth | meth_2.2 |
| samp_collect_device | meth_1.4 |
| samp_mat_process | meth_1.4 |
| sample_attribution | IMOS|CSIRO |
| sample_database_file | AM_db_v4.2_202402091224.db |
| sample_id | 102.100.100/403643 |
| sample_metadata_ingest_date | 2024-02-09 12:24:08 |
| sample_metadata_ingest_file | AODN_AM_NRS_202402081638_GOLD_xlsx |
| sample_site_location_description | Maria Island |
| sample_submitter | Jodie van de Kamp [https://orcid.org/0000-0003-2167-0938] |
| sample_type | Pelagic |
| secchi_depth (m) | 16.0 |
| secchi_depth_meth | meth_2.2 |
| sequencing_facility | Ramaciotti |
| silicate (μmol/L) | 0.9 |
| silicate_meth | meth_2.2 |
| source_mat_id | 102.100.100/403643 |
| store_cond | meth_1.4 |
| synechococcus (cells/mL) | 17556.5 |
| synechococcus_meth | meth_2.2 |
| target | 16S |
| temp (degC) | 13.8847 |
| temp_meth | meth_2.2 |
| ticket | BPAOPS-1589 |
| tss (mg/L) | 0.4 |
| tss_meth | meth_2.2 |
| turbidity (NTU) | 1.257 |
| turbidity_meth | meth_2.2 |
| url | https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/403643 |
| utc_date_sampled | 2023-06-13 |
| utc_time_sampled | 00:34:00 |
| zooplankton_biomass (mg/m3) | 0.3914 |
| zooplankton_biomass_meth | meth_2.2int |