Australian Microbiome Amplicons 16S 102.100.100/403475 LHMB9
Dataset size is: 24.26 MiB
Data and Resources
This data is made available openly under a Creative Commons Attribution license.
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:90:am-consortium-members |
| Access Control Date | 2024-08-13 |
| Access Control Mode | date |
| Sequence Data Type | illumina-amplicons |
| absorbance_260_280_ratio_submitter | -9999.0 |
| alkalinity (μmol/kg) | -9999.0 |
| am_environment | Marine |
| ammonium (μmol/L) | -9999.0 |
| amplicon | 16S |
| analysis_software | Local Run Manager |
| analysis_software_version | 4.1.0 |
| analytical_platform | MiSeq |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/amd/amplicons-miseq/16s/BPAOPS-1589/240216_AM_16S_UNSW_LHMB9/ |
| biotic_relationship | Free-living |
| ccg_jira_ticket | BPAOPS-1589 |
| chlorophyll_a (mg/m3) | -9999.0 |
| chlorophyll_ctd (mg/m3) | -9999.0 |
| coastal_id | WQQ840_D1 |
| collection_date | 2023-10-25T22:20:00 |
| comments | 403475_16S_LHMB9_GAGGCTCA-ACGACGTG |
| conductivity_aqueous (S/m) | -9999.0 |
| data_type | 16S |
| database_schema_definitions_url | https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx |
| date_of_transfer | 2024-05-15 |
| date_of_transfer_to_archive | 2024-05-16 |
| depth (m) | 36.0 |
| depth_lower (m) | 36.0 |
| depth_upper (m) | 36.0 |
| description | MiSeq data package |
| dilution_used | neat |
| dna_concentration_submitter (ng/μL) | -9999.0 |
| download | Replaces BPAOPS-1569 |
| env_broad_scale | 7 Other |
| env_local_scale | 7.1.2 Coastal water-production |
| env_medium | Sea water [ENVO_00002149] |
| flow_id | LHMB9 |
| fluor (AU) | -9999.0 |
| folder_name | 240216_AM_16S_UNSW_LHMB9 |
| funding_agency | AIMS; CSIRO; IMOS |
| general_env_feature | Marine - neritic (coastal off shore) |
| geo_loc_name | Australia:Great Barrier Reef [GAZ_00009717] |
| imos_site_code | CSGNI |
| index | GAGGCTCA-ACGACGTG |
| lat_lon (decimal_degrees) | -16.7767 145.9583 |
| latitude (decimal_degrees) | -16.7767 |
| longitude (decimal_degrees) | 145.9583 |
| microbial_abundance (cells/mL) | 1100784.0 |
| microbial_abundance_meth | meth_2.2 |
| nitrate (μmol/L) | -9999.0 |
| nitrate_nitrite (μmol/L) | -9999.0 |
| nitrite (μmol/L) | -9999.0 |
| nucl_acid_ext | meth_3.1.9 |
| omics | Genomics |
| oxygen (μmol/L) | -9999.0 |
| par (μmol/m2/s) | -9999.0 |
| part_org_carb (μmol/L) | -9999.0 |
| pass_fail | P |
| ph | -9999.0 |
| phosphate (μmol/L) | -9999.0 |
| picoeukaryotes (cells/mL) | 4287.0 |
| picoeukaryotes_meth | meth_2.2 |
| prochlorococcus (cells/mL) | 19670.0 |
| prochlorococcus_meth | meth_2.2 |
| reads | 59098.0 |
| salinity (PSU) | -9999.0 |
| salinity_lab (PSU) | -9999.0 |
| samp_collect_device | meth_1.5.2 |
| samp_mat_process | meth_1.5.2 |
| samp_size (L) | 2.0 |
| samp_vol_we_dna_ext (L) | 2.0 |
| sample_attribution | Great Barrier Reef Marine Monitoring Program for Inshore Water Quality; CSIRO; IMOS |
| sample_database_file | AM_db_v4.2_202410080900.db |
| sample_id | 102.100.100/403475 |
| sample_metadata_ingest_date | 2024-07-05 13:29:16 |
| sample_metadata_ingest_file | CoastalMAP_ALL_epasd_GOLDupdated05072024_FullREPLACE_xlsx |
| sample_site_location_description | Green Island |
| sample_submitter | Yun Kit Yeoh[y.yeoh@aims.gov.au;https://orcid.org/0000-0003-0241-6117]|David G. Bourne[david.bourne@jcu.edu.au;https://orcid.org/0000-0002-1492-8710] |
| sample_type | Coastal water |
| secchi_depth (m) | -9999.0 |
| sequencing_facility | Ramaciotti |
| silicate (μmol/L) | -9999.0 |
| source_mat_id | 102.100.100/403475 |
| store_cond | meth_1.5.2 |
| synechococcus (cells/mL) | 65117.0 |
| synechococcus_meth | meth_2.2 |
| synonyms | GNI20231025_102.100.100/403475_36 |
| target | 16S |
| temp (degC) | -9999.0 |
| ticket | BPAOPS-1589 |
| tot_depth_water_col (m) | -9999.0 |
| tot_nitro (%) | -9999.0 |
| tot_phosp (%) | -9999.0 |
| transmittance (%) | -9999.0 |
| tss (mg/L) | -9999.0 |
| turbidity (NTU) | -9999.0 |
| url | https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/403475 |
| utc_date_sampled | 2023-10-25 |
| utc_time_sampled | 22:20:00 |