Australian Microbiome Amplicons 16S 102.100.100/402272 LHMB7
Dataset size is: 40.16 MiB
This dataset is currently under a short embargo period until August 13, 2024 to enable primary access by research partners.
If you would like access during this period please contact us here or contact the project lead directly (see details in the table below) for collaboration opportunities.
Data and Resources
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:90:am-consortium-members |
| Access Control Date | 2024-08-13 |
| Access Control Mode | date |
| Sequence Data Type | illumina-amplicons |
| Related Data | doi:10.25953/bh2s-3d51 |
| am_environment | Marine |
| ammonium (μmol/L) | 0.23 |
| ammonium_meth | meth_2.2 |
| amplicon | 16S |
| analysis_software | Local Run Manager |
| analysis_software_version | 4.1.0 |
| analytical_platform | MiSeq |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/amd/amplicons-miseq/16s/BPAOPS-1590/240216_AM_16S_UNSW_LHMB7/ |
| bioplatforms_dataset_id | 102.100.100/401915 |
| bioplatforms_project | Australian Microbiome Initiative (AM) |
| bioplatforms_project_code | AM0001 |
| biotic_relationship | Free-living |
| ccg_jira_ticket | BPAOPS-1590 |
| collection_date | 2023-03-09T21:25:00 |
| comments | 402272_16S_LHMB7_GGCCACGT-ACGCGTGA |
| data_type | 16S |
| database_schema_definitions_url | https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx |
| dataset_id | 102.100.100/401915 |
| date_of_transfer | 2024-05-15 |
| date_of_transfer_to_archive | 2024-05-17 |
| depth (m) | 2.0 |
| depth_lower (m) | 2.0 |
| depth_upper (m) | 2.0 |
| description | MiSeq data package |
| dilution_used | neat |
| dna_concentration_submitter (ng/μL) | 22.2 |
| dna_concentration_submitter_meth | meth_3.3.3 |
| download | Replaces BPAOPS-1558 |
| env_broad_scale | Coastal water |
| env_local_scale | Coastal water - intensive use |
| env_medium | Sea water [ENVO_00002149] |
| flow_id | LHMB7 |
| folder_name | 240216_AM_16S_UNSW_LHMB7 |
| funding_agency | UTS; CRC food agility; CSIRO; IMOS |
| general_env_feature | Marine - neritic (coastal off shore) |
| geo_loc_name | Australia:Botany Bay [GAZ:00002797] |
| index | GGCCACGT-ACGCGTGA |
| lat_lon (decimal_degrees) | -34.006805 151.192103 |
| latitude (decimal_degrees) | -34.006805 |
| longitude (decimal_degrees) | 151.192103 |
| nitrate_nitrite (μmol/L) | 0.3 |
| nitrate_nitrite_meth | meth_2.2 |
| nitrite (μmol/L) | 0.0 |
| nitrite_meth | meth_2.2 |
| nucl_acid_ext | meth_3.1.9 |
| omics | Genomics |
| pass_fail | P |
| phosphate (μmol/L) | 0.15 |
| phosphate_meth | meth_2.2 |
| reads | 97416.0 |
| samp_collect_device | meth_1.5.1 |
| samp_mat_process | meth_1.5.1 |
| samp_size (L) | 2.0 |
| samp_vol_we_dna_ext (L) | 2.0 |
| sample_attribution | UTS; CRC food agility; CSIRO; IMOS |
| sample_database_file | AM_db_v4.2_202402091224.db |
| sample_id | 102.100.100/402272 |
| sample_metadata_ingest_date | 2023-12-12 13:58:50 |
| sample_metadata_ingest_file | Sample_Submission_sheet_20230411_schema_v3_vocab_3_0_0_BotanyBay_Y1Y2Y3_FullREPLACE_FullREPLACE_FullREPLACE_FullREPLACE_xlsx |
| sample_site_location_description | Towra Point |
| sample_submitter | Shauna Murray; Matt Tesoriero |
| sample_type | Coastal water |
| sequencing_facility | Ramaciotti |
| silicate (μmol/L) | 0.6 |
| silicate_meth | meth_2.2 |
| source_mat_id | 102.100.100/402272 |
| store_cond | meth_1.5.1 |
| target | 16S |
| ticket | BPAOPS-1590 |
| url | https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/402272 |
| utc_date_sampled | 2023-03-09 |
| utc_time_sampled | 21:25:00 |