Australian Microbiome Amplicons 16S 102.100.100/141250 JKJTF

Maria Island, 16S MiSeq

Dataset size is: 60.62 MiB

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This data is made available openly under a Creative Commons Attribution license. Please see the initiative Data Policy for attribution information.

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Field Value
Geospatial Coverage

Dataset extent

Map tiles & Data by OpenStreetMap, under CC BY SA.
Resource Permissions organization_member_after_embargo:date_of_transfer_to_archive:90:am-consortium-members
Access Control Date 2021-09-01
Access Control Mode date
Sequence Data Type illumina-amplicons
Related Data doi:10.25953/z3tc-a185
alkalinity (μmol/kg) 2321.13
alkalinity_meth meth_2.2
am_environment Marine
ammonium (μmol/L) 0.09
ammonium_meth meth_2.2
amplicon 16S
analysis_software MiSeq Reporter
analysis_software_version 2.6.2.3
analytical_platform MiSeq
base_url https://downloads-qcif.bioplatforms.com/bpa/amd/amplicons-miseq/16s/BPAOPS-1078/
bioplatforms_dataset_id 102.100.100/401949
bioplatforms_project Australian Microbiome Initiative (AM)
bioplatforms_project_code AM_NRS
biotic_relationship Free-living
ccg_jira_ticket BPAOPS-1078
chlorophyll_ctd (mg/m3) 0.0751
chlorophyll_ctd_meth meth_2.2
collection_date 2021-01-06T22:54:00
comments 141250_16S_JKJTF_GACAGGAG-ACGACGTG
conductivity_aqueous (S/m) 4.2209
conductivity_aqueous_meth meth_2.2
data_type 16S
database_schema_definitions_url https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx
dataset_id 102.100.100/401949
date_of_transfer 2021-06-03
date_of_transfer_to_archive 2021-06-03
density (kg/m3) 1026.8503
density_meth meth_2.2
depth (m) 85.0
depth_lower (m) 85.0
depth_upper (m) 85.0
description MiSeq data package
dilution_used neat
env_broad_scale 7 Other
env_local_scale 7.2.1 Open ocean water-conservation
env_medium Sea water [ENVO_00002149]
flow_id JKJTF
folder_name 20210603_AM_16S_UNSW_JKJTF
funding_agency IMOS|CSIRO
general_env_feature Marine - neritic (coastal off shore)
geo_loc_name Australia:Tasman Sea coastal waters of continental Australia [GAZ_00143737]
imos_site_code NRSMAI
index GACAGGAG-ACGACGTG
lat_lon (decimal_degrees) -42.5967 148.2333
latitude (decimal_degrees) -42.5967
longitude (decimal_degrees) 148.2333
nitrate (μmol/L) 9.1
nitrate_meth meth_2.2
nitrite (μmol/L) 0.21
nitrite_meth meth_2.2
nrs_sample_code MAI20210106_85
nrs_trip_code MAI20210106
nucl_acid_ext meth_3.1.9
omics Genomics
oxygen (μmol/L) 218.2
oxygen_ctd_vol (mL/L) 216.652
oxygen_ctd_vol_meth meth_2.2
oxygen_meth meth_2.2
pass_fail P
phosphate (μmol/L) 0.71
phosphate_meth meth_2.2
picoeukaryotes (cells/mL) 70607.5
picoeukaryotes_meth meth_2.2int
prochlorococcus (cells/mL) 746.5
prochlorococcus_meth meth_2.2int
reads 117497.0
salinity (PSU) 35.3301
salinity_lab (PSU) 35.324
salinity_lab_meth meth_2.2
salinity_meth meth_2.2
samp_collect_device meth_1.4
samp_mat_process meth_1.4
samp_size (L) 2.0
samp_vol_we_dna_ext (L) 2.0
sample_attribution IMOS|CSIRO
sample_database_file AM_db_v4.2_202408091431.db
sample_id 102.100.100/141250
sample_metadata_ingest_date 2022-11-29 17:13:14
sample_metadata_ingest_file AODN_AM_NRS_ALL_to_SEP2022_202211291332_GOLD_FullREPLACE_xlsx
sample_site_location_description Maria Island
sample_submitter Jodie van de Kamp [https://orcid.org/0000-0003-2167-0938]
sample_type Pelagic
secchi_depth (m) 14.0
secchi_depth_meth meth_2.2
sequencing_facility Ramaciotti
silicate (μmol/L) 3.3
silicate_meth meth_2.2
source_mat_id 102.100.100/141250
store_cond meth_1.4
synechococcus (cells/mL) 74102.0
synechococcus_meth meth_2.2int
target 16S
temp (degC) 13.8773
temp_meth meth_2.2
ticket BPAOPS-1078
total_co2 (μmol/kg) 2119.45
total_co2_meth meth_2.2
tss (mg/L) 0.3
tss_meth meth_2.2int
turbidity (NTU) 0.7907
turbidity_meth meth_2.2
url https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/141250
utc_date_sampled 2021-01-06
utc_time_sampled 22:54:00
zooplankton_biomass (mg/m3) 9.6801
zooplankton_biomass_meth meth_2.2int