Australian Microbiome Amplicons 16S 102.100.100/141247 JKJTF
Dataset size is: 164.62 MiB
Data and Resources
This data is made available openly under a Creative Commons Attribution license.
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:90:am-consortium-members |
| Access Control Date | 2021-09-01 |
| Access Control Mode | date |
| Sequence Data Type | illumina-amplicons |
| Related Data | doi:10.25953/z3tc-a185 |
| alkalinity (μmol/kg) | 2319.99 |
| alkalinity_meth | meth_2.2 |
| am_environment | Marine |
| ammonium (μmol/L) | 0.27 |
| ammonium_meth | meth_2.2 |
| amplicon | 16S |
| analysis_software | MiSeq Reporter |
| analysis_software_version | 2.6.2.3 |
| analytical_platform | MiSeq |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/amd/amplicons-miseq/16s/BPAOPS-1078/ |
| bioplatforms_dataset_id | 102.100.100/401949 |
| bioplatforms_project | Australian Microbiome Initiative (AM) |
| bioplatforms_project_code | AM_NRS |
| biotic_relationship | Free-living |
| ccg_jira_ticket | BPAOPS-1078 |
| chlorophyll_ctd (mg/m3) | 0.317 |
| chlorophyll_ctd_meth | meth_2.2 |
| collection_date | 2020-08-10T00:05:00 |
| comments | 141247_16S_JKJTF_GACAGGAG-AAGCAGCA |
| conductivity_aqueous (S/m) | 4.0297 |
| conductivity_aqueous_meth | meth_2.2 |
| data_type | 16S |
| database_schema_definitions_url | https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx |
| dataset_id | 102.100.100/401949 |
| date_of_transfer | 2021-06-03 |
| date_of_transfer_to_archive | 2021-06-03 |
| density (kg/m3) | 1027.1349 |
| density_meth | meth_2.2 |
| depth (m) | 75.0 |
| depth_lower (m) | 75.0 |
| depth_upper (m) | 75.0 |
| description | MiSeq data package |
| dilution_used | neat |
| env_broad_scale | 7 Other |
| env_local_scale | 7.2.1 Open ocean water-conservation |
| env_medium | Sea water [ENVO_00002149] |
| flow_id | JKJTF |
| folder_name | 20210603_AM_16S_UNSW_JKJTF |
| funding_agency | IMOS|CSIRO |
| general_env_feature | Marine - neritic (coastal off shore) |
| geo_loc_name | Australia:Tasman Sea coastal waters of continental Australia [GAZ_00143737] |
| imos_site_code | NRSMAI |
| index | GACAGGAG-AAGCAGCA |
| lat_lon (decimal_degrees) | -42.5967 148.2333 |
| latitude (decimal_degrees) | -42.5967 |
| longitude (decimal_degrees) | 148.2333 |
| nitrate (μmol/L) | 3.5 |
| nitrate_meth | meth_2.2 |
| nitrite (μmol/L) | 0.29 |
| nitrite_meth | meth_2.2 |
| nrs_sample_code | MAI20200810_75 |
| nrs_trip_code | MAI20200810 |
| nucl_acid_ext | meth_3.1.9 |
| omics | Genomics |
| oxygen (μmol/L) | 265.8 |
| oxygen_ctd_vol (mL/L) | 264.9623 |
| oxygen_ctd_vol_meth | meth_2.2 |
| oxygen_meth | meth_2.2 |
| pass_fail | P |
| phosphate (μmol/L) | 0.44 |
| phosphate_meth | meth_2.2 |
| picoeukaryotes (cells/mL) | 15721.0 |
| picoeukaryotes_meth | meth_2.2int |
| prochlorococcus (cells/mL) | 1189.5 |
| prochlorococcus_meth | meth_2.2int |
| reads | 356739.0 |
| salinity (PSU) | 35.2686 |
| salinity_lab (PSU) | 35.26 |
| salinity_lab_meth | meth_2.2 |
| salinity_meth | meth_2.2 |
| samp_collect_device | meth_1.4 |
| samp_mat_process | meth_1.4 |
| samp_size (L) | 2.0 |
| samp_vol_we_dna_ext (L) | 2.0 |
| sample_attribution | IMOS|CSIRO |
| sample_database_file | AM_db_v4.2_202408091431.db |
| sample_id | 102.100.100/141247 |
| sample_metadata_ingest_date | 2022-11-29 17:13:14 |
| sample_metadata_ingest_file | AODN_AM_NRS_ALL_to_SEP2022_202211291332_GOLD_FullREPLACE_xlsx |
| sample_site_location_description | Maria Island |
| sample_submitter | Jodie van de Kamp [https://orcid.org/0000-0003-2167-0938] |
| sample_type | Pelagic |
| secchi_depth (m) | 19.0 |
| secchi_depth_meth | meth_2.2 |
| sequencing_facility | Ramaciotti |
| silicate (μmol/L) | 1.5 |
| silicate_meth | meth_2.2 |
| source_mat_id | 102.100.100/141247 |
| store_cond | meth_1.4 |
| synechococcus (cells/mL) | 22531.0 |
| synechococcus_meth | meth_2.2int |
| target | 16S |
| temp (degC) | 11.9883 |
| temp_meth | meth_2.2 |
| ticket | BPAOPS-1078 |
| total_co2 (μmol/kg) | 2110.67 |
| total_co2_meth | meth_2.2 |
| tss (mg/L) | 0.3 |
| tss_meth | meth_2.2int |
| turbidity (NTU) | 0.9719 |
| turbidity_meth | meth_2.2 |
| url | https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/141247 |
| utc_date_sampled | 2020-08-10 |
| utc_time_sampled | 00:05:00 |
| zooplankton_biomass (mg/m3) | 4.8424 |
| zooplankton_biomass_meth | meth_2.2int |