Australian Microbiome Amplicons 16S 102.100.100/141240 JKJTF

Maria Island, 16S MiSeq

Dataset size is: 76.47 MiB

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This data is made available openly under a Creative Commons Attribution license. Please see the initiative Data Policy for attribution information.

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Field Value
Geospatial Coverage

Dataset extent

Map tiles & Data by OpenStreetMap, under CC BY SA.
Resource Permissions organization_member_after_embargo:date_of_transfer_to_archive:90:am-consortium-members
Access Control Date 2021-09-01
Access Control Mode date
Sequence Data Type illumina-amplicons
Related Data doi:10.25953/z3tc-a185
alkalinity (μmol/kg) 2312.24
alkalinity_meth meth_2.2
am_environment Marine
ammonium (μmol/L) 0.16
ammonium_meth meth_2.2
amplicon 16S
analysis_software MiSeq Reporter
analysis_software_version 2.6.2.3
analytical_platform MiSeq
base_url https://downloads-qcif.bioplatforms.com/bpa/amd/amplicons-miseq/16s/BPAOPS-1078/
bioplatforms_dataset_id 102.100.100/401949
bioplatforms_project Australian Microbiome Initiative (AM)
bioplatforms_project_code AM_NRS
biotic_relationship Free-living
ccg_jira_ticket BPAOPS-1078
chlorophyll_ctd (mg/m3) 1.7067
chlorophyll_ctd_meth meth_2.2
collection_date 2019-09-25T00:03:00
comments 141240_16S_JKJTF_CTAGCGAA-ACGCGTGA
conductivity_aqueous (S/m) 3.9843
conductivity_aqueous_meth meth_2.2
data_type 16S
database_schema_definitions_url https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx
dataset_id 102.100.100/401949
date_of_transfer 2021-06-03
date_of_transfer_to_archive 2021-06-03
density (kg/m3) 1026.746
density_meth meth_2.2
depth (m) 10.0
depth_lower (m) 10.0
depth_upper (m) 10.0
description MiSeq data package
dilution_used neat
env_broad_scale 7 Other
env_local_scale 7.2.1 Open ocean water-conservation
env_medium Sea water [ENVO_00002149]
flow_id JKJTF
folder_name 20210603_AM_16S_UNSW_JKJTF
funding_agency IMOS|CSIRO
general_env_feature Marine - neritic (coastal off shore)
geo_loc_name Australia:Tasman Sea coastal waters of continental Australia [GAZ_00143737]
imos_site_code NRSMAI
index CTAGCGAA-ACGCGTGA
lat_lon (decimal_degrees) -42.5967 148.2333
latitude (decimal_degrees) -42.5967
longitude (decimal_degrees) 148.2333
nitrate (μmol/L) 2.9
nitrate_meth meth_2.2
nitrite (μmol/L) 0.2
nitrite_meth meth_2.2
nrs_sample_code MAI20190925_10
nrs_trip_code MAI20190925
nucl_acid_ext meth_3.1.9
omics Genomics
oxygen (μmol/L) 294.1
oxygen_ctd_vol (mL/L) 289.0264
oxygen_ctd_vol_meth meth_2.2
oxygen_meth meth_2.2
pass_fail P
phosphate (μmol/L) 0.38
phosphate_meth meth_2.2
picoeukaryotes (cells/mL) 2837.5
picoeukaryotes_meth meth_2.2int
prochlorococcus (cells/mL) 61.0
prochlorococcus_meth meth_2.2int
reads 158298.0
salinity (PSU) 35.0822
salinity_lab (PSU) 35.078
salinity_lab_meth meth_2.2
salinity_meth meth_2.2
samp_collect_device meth_1.4
samp_mat_process meth_1.4
samp_size (L) 2.0
samp_vol_we_dna_ext (L) 2.0
sample_attribution IMOS|CSIRO
sample_database_file AM_db_v4.2_202408091431.db
sample_id 102.100.100/141240
sample_metadata_ingest_date 2022-11-29 17:13:14
sample_metadata_ingest_file AODN_AM_NRS_ALL_to_SEP2022_202211291332_GOLD_FullREPLACE_xlsx
sample_site_location_description Maria Island
sample_submitter Jodie van de Kamp [https://orcid.org/0000-0003-2167-0938]
sample_type Pelagic
secchi_depth (m) 11.0
secchi_depth_meth meth_2.2
sequencing_facility Ramaciotti
silicate (μmol/L) 0.4
silicate_meth meth_2.2
source_mat_id 102.100.100/141240
store_cond meth_1.4
synechococcus (cells/mL) 1041.5
synechococcus_meth meth_2.2int
target 16S
temp (degC) 11.7462
temp_meth meth_2.2
ticket BPAOPS-1078
total_co2 (μmol/kg) 2089.01
total_co2_meth meth_2.2
tss (mg/L) 0.6
tss_meth meth_2.2int
turbidity (NTU) 0.5983
turbidity_meth meth_2.2
url https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/141240
utc_date_sampled 2019-09-25
utc_time_sampled 00:03:00
zooplankton_biomass (mg/m3) 9.086
zooplankton_biomass_meth meth_2.2int