Australian Microbiome Amplicons 16S 102.100.100/138630 JJ8FH
Dataset size is: 33.75 MiB
Data and Resources
This data is made available openly under a Creative Commons Attribution license.
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Additional Info Show Blank Fields
Field | Value |
---|---|
Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:90:am-consortium-members |
Access Control Date | 2021-09-16 |
Access Control Mode | date |
Sequence Data Type | illumina-amplicons |
Related Data | doi:10.25953/bh2s-3d51 |
am_environment | Marine |
ammonium (μmol/L) | 5.06 |
ammonium_meth | meth_2.2 |
amplicon | 16S |
analysis_software | MiSeq Reporter |
analysis_software_version | 2.6.2.3 |
analytical_platform | MiSeq |
base_url | https://downloads-qcif.bioplatforms.com/bpa/amd/amplicons-miseq/16s/BPAOPS-1088/ |
bioplatforms_dataset_id | 102.100.100/401915 |
bioplatforms_project | Australian Microbiome Initiative (AM) |
bioplatforms_project_code | AM0001 |
biotic_relationship | Free-living |
ccg_jira_ticket | BPAOPS-1088 |
collection_date | 2020-07-30T13:15:00 |
comments | 138630_16S_JJ8FH_TAGGAACT-ACGACGTG |
data_type | 16S |
database_schema_definitions_url | https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx |
dataset_id | 102.100.100/401915 |
date_of_transfer | 2021-06-18 |
date_of_transfer_to_archive | 2021-06-18 |
depth (m) | 2.0 |
depth_lower (m) | 2.0 |
depth_upper (m) | 2.0 |
description | MiSeq data package |
dilution_used | neat |
env_broad_scale | Coastal water |
env_local_scale | 7.1.1 Coastal water-conservation |
env_medium | Sea water [ENVO_00002149] |
flow_id | JJ8FH |
folder_name | 20210618_AM_16S_UNSW_JJ8FH |
funding_agency | UTS; CRC food agility; CSIRO; IMOS |
general_env_feature | Marine - neritic (coastal off shore) |
geo_loc_name | Australia:Botany Bay [GAZ:00002797] |
index | TAGGAACT-ACGACGTG |
lat_lon (decimal_degrees) | -34.006805 151.192103 |
latitude (decimal_degrees) | -34.006805 |
longitude (decimal_degrees) | 151.192103 |
microbial_abundance (cells/mL) | 1006400.0 |
nitrate_nitrite (μmol/L) | 3.8 |
nitrate_nitrite_meth | meth_2.2 |
nitrite (μmol/L) | 0.3 |
nitrite_meth | meth_2.2 |
nucl_acid_ext | meth_3.1.9 |
omics | Genomics |
pass_fail | P |
phosphate (μmol/L) | 0.51 |
phosphate_meth | meth_2.2 |
picoeukaryotes (cells/mL) | 6809.0 |
picoeukaryotes_meth | meth_2.2 |
prochlorococcus (cells/mL) | 0.0 |
prochlorococcus_meth | meth_2.2 |
reads | 69337.0 |
samp_collect_device | meth_1.5.1 |
samp_mat_process | meth_1.5.1 |
samp_size (L) | 2.0 |
samp_vol_we_dna_ext (L) | 2.0 |
sample_attribution | UTS; CRC food agility; CSIRO; IMOS |
sample_database_file | AM_db_v4.2_202402091224.db |
sample_id | 102.100.100/138630 |
sample_metadata_ingest_date | 2023-12-12 13:58:50 |
sample_metadata_ingest_file | Sample_Submission_sheet_20230411_schema_v3_vocab_3_0_0_BotanyBay_Y1Y2Y3_FullREPLACE_FullREPLACE_FullREPLACE_FullREPLACE_xlsx |
sample_site_location_description | Towra Point |
sample_submitter | Shauna Murray; Arjun Verma |
sample_type | Coastal water |
sequencing_facility | Ramaciotti |
silicate (μmol/L) | 5.7 |
silicate_meth | meth_2.2 |
source_mat_id | 102.100.100/138630 |
store_cond | meth_1.5.1 |
synechococcus (cells/mL) | 252.0 |
synechococcus_meth | meth_2.2 |
target | 16S |
temp (degC) | 17.7 |
ticket | BPAOPS-1088 |
url | https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/138630 |
utc_date_sampled | 2020-07-30 |
utc_time_sampled | 13:15:00 |