Australian Microbiome Amplicons 16S 102.100.100/138628 JL8GH
Dataset size is: 38.97 MiB
Data and Resources
This data is made available openly under a Creative Commons Attribution license.
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Additional Info Show Blank Fields
Field | Value |
---|---|
Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:90:am-consortium-members |
Access Control Date | 2021-09-01 |
Access Control Mode | date |
Sequence Data Type | illumina-amplicons |
Related Data | doi:10.25953/bh2s-3d51 |
am_environment | Marine |
amplicon | 16S |
analysis_software | MiSeq Reporter |
analysis_software_version | 2.6.2.3 |
analytical_platform | MiSeq |
base_url | https://downloads-qcif.bioplatforms.com/bpa/amd/amplicons-miseq/16s/BPAOPS-1077/ |
bioplatforms_dataset_id | 102.100.100/401915 |
bioplatforms_project | Australian Microbiome Initiative (AM) |
bioplatforms_project_code | AM0001 |
biotic_relationship | Free-living |
ccg_jira_ticket | BPAOPS-1077 |
collection_date | 2020-07-16T12:30:00 |
comments | 138628_16S_JL8GH_CTAGCGAA-CGATCTAC |
data_type | 16S |
database_schema_definitions_url | https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx |
dataset_id | 102.100.100/401915 |
date_of_transfer | 2021-06-03 |
date_of_transfer_to_archive | 2021-06-03 |
depth (m) | 2.0 |
depth_lower (m) | 2.0 |
depth_upper (m) | 2.0 |
description | MiSeq data package |
dilution_used | neat |
env_broad_scale | Coastal water |
env_local_scale | 7.1.1 Coastal water-conservation |
env_medium | Sea water [ENVO_00002149] |
flow_id | JL8GH |
folder_name | 20210603_AM_16S_UNSW_JL8GH |
funding_agency | UTS; CRC food agility; CSIRO; IMOS |
general_env_feature | Marine - neritic (coastal off shore) |
geo_loc_name | Australia:Botany Bay [GAZ:00002797] |
index | CTAGCGAA-CGATCTAC |
lat_lon (decimal_degrees) | -34.006805 151.192103 |
latitude (decimal_degrees) | -34.006805 |
longitude (decimal_degrees) | 151.192103 |
microbial_abundance (cells/mL) | 1927800.0 |
nucl_acid_ext | meth_3.1.9 |
omics | Genomics |
pass_fail | P |
picoeukaryotes (cells/mL) | 34043.0 |
picoeukaryotes_meth | meth_2.2 |
prochlorococcus (cells/mL) | 757.0 |
prochlorococcus_meth | meth_2.2 |
reads | 76862.0 |
samp_collect_device | meth_1.5.1 |
samp_mat_process | meth_1.5.1 |
samp_size (L) | 0.4 |
samp_vol_we_dna_ext (L) | 0.4 |
sample_attribution | UTS; CRC food agility; CSIRO; IMOS |
sample_database_file | AM_db_v4.2_202402091224.db |
sample_id | 102.100.100/138628 |
sample_metadata_ingest_date | 2023-12-12 13:58:50 |
sample_metadata_ingest_file | Sample_Submission_sheet_20230411_schema_v3_vocab_3_0_0_BotanyBay_Y1Y2Y3_FullREPLACE_FullREPLACE_FullREPLACE_FullREPLACE_xlsx |
sample_site_location_description | Towra Point |
sample_submitter | Shauna Murray; Arjun Verma |
sample_type | Coastal water |
sample_volume_notes | High biomass/particulate matter |
sequencing_facility | Ramaciotti |
source_mat_id | 102.100.100/138628 |
store_cond | meth_1.5.1 |
synechococcus (cells/mL) | 757.0 |
synechococcus_meth | meth_2.2 |
target | 16S |
temp (degC) | 13.9 |
ticket | BPAOPS-1077 |
url | https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/138628 |
utc_date_sampled | 2020-07-16 |
utc_time_sampled | 12:30:00 |