Australian Microbiome Amplicons 16S 102.100.100/138627 JJ8FH
Dataset size is: 20.07 MiB
Data and Resources
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:90:am-consortium-members |
| Access Control Date | 2021-09-16 |
| Access Control Mode | date |
| Sequence Data Type | illumina-amplicons |
| Related Data | doi:10.25953/bh2s-3d51 |
| am_environment | Marine |
| ammonium (μmol/L) | 0.68 |
| ammonium_meth | meth_2.2 |
| amplicon | 16S |
| analysis_software | MiSeq Reporter |
| analysis_software_version | 2.6.2.3 |
| analytical_platform | MiSeq |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/amd/amplicons-miseq/16s/BPAOPS-1088/ |
| bioplatforms_dataset_id | 102.100.100/401915 |
| bioplatforms_project | Australian Microbiome Initiative (AM) |
| bioplatforms_project_code | AM0001 |
| biotic_relationship | Free-living |
| ccg_jira_ticket | BPAOPS-1088 |
| collection_date | 2020-07-16T12:15:00 |
| comments | 138627_16S_JJ8FH_TAGGAACT-CGATCTAC |
| data_type | 16S |
| database_schema_definitions_url | https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx |
| dataset_id | 102.100.100/401915 |
| date_of_transfer | 2021-06-18 |
| date_of_transfer_to_archive | 2021-06-18 |
| depth (m) | 2.0 |
| depth_lower (m) | 2.0 |
| depth_upper (m) | 2.0 |
| description | MiSeq data package |
| dilution_used | neat |
| env_broad_scale | Coastal water |
| env_local_scale | 7.1.1 Coastal water-conservation |
| env_medium | Sea water [ENVO_00002149] |
| flow_id | JJ8FH |
| folder_name | 20210618_AM_16S_UNSW_JJ8FH |
| funding_agency | UTS; CRC food agility; CSIRO; IMOS |
| general_env_feature | Marine - neritic (coastal off shore) |
| geo_loc_name | Australia:Botany Bay [GAZ:00002797] |
| index | TAGGAACT-CGATCTAC |
| lat_lon (decimal_degrees) | -34.006805 151.192103 |
| latitude (decimal_degrees) | -34.006805 |
| longitude (decimal_degrees) | 151.192103 |
| microbial_abundance (cells/mL) | 1665150.0 |
| nitrate_nitrite (μmol/L) | 1.0 |
| nitrate_nitrite_meth | meth_2.2 |
| nitrite (μmol/L) | 0.0 |
| nitrite_meth | meth_2.2 |
| nucl_acid_ext | meth_3.1.9 |
| omics | Genomics |
| pass_fail | P |
| phosphate (μmol/L) | 0.18 |
| phosphate_meth | meth_2.2 |
| picoeukaryotes (cells/mL) | 38667.0 |
| picoeukaryotes_meth | meth_2.2 |
| prochlorococcus (cells/mL) | 672.0 |
| prochlorococcus_meth | meth_2.2 |
| reads | 42478.0 |
| samp_collect_device | meth_1.5.1 |
| samp_mat_process | meth_1.5.1 |
| samp_size (L) | 0.4 |
| samp_vol_we_dna_ext (L) | 0.4 |
| sample_attribution | UTS; CRC food agility; CSIRO; IMOS |
| sample_database_file | AM_db_v4.2_202402091224.db |
| sample_id | 102.100.100/138627 |
| sample_metadata_ingest_date | 2023-12-12 13:58:50 |
| sample_metadata_ingest_file | Sample_Submission_sheet_20230411_schema_v3_vocab_3_0_0_BotanyBay_Y1Y2Y3_FullREPLACE_FullREPLACE_FullREPLACE_FullREPLACE_xlsx |
| sample_site_location_description | Towra Point |
| sample_submitter | Shauna Murray; Arjun Verma |
| sample_type | Coastal water |
| sample_volume_notes | High biomass/particulate matter |
| sequencing_facility | Ramaciotti |
| silicate (μmol/L) | 2.6 |
| silicate_meth | meth_2.2 |
| source_mat_id | 102.100.100/138627 |
| store_cond | meth_1.5.1 |
| synechococcus (cells/mL) | 1345.0 |
| synechococcus_meth | meth_2.2 |
| target | 16S |
| temp (degC) | 13.8 |
| ticket | BPAOPS-1088 |
| url | https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/138627 |
| utc_date_sampled | 2020-07-16 |
| utc_time_sampled | 12:15:00 |