Australian Microbiome Amplicons 16S 102.100.100/138600 K39YG
Dataset size is: 112.57 MiB
Data and Resources
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:90:am-consortium-members |
| Access Control Date | 2022-02-01 |
| Access Control Mode | date |
| Sequence Data Type | illumina-amplicons |
| Related Data | doi:10.25953/ep2x-jh13 |
| am_environment | Marine |
| ammonium (μmol/L) | -9999.0 |
| amplicon | 16S |
| analysis_software | MiSeq Reporter |
| analysis_software_version | 2.6.2.3 |
| analytical_platform | MiSeq |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/amd/amplicons-miseq/16s/BPAOPS-1159/ |
| bicarbonate (mg/L) | -9999.0 |
| bioplatforms_dataset_id | 102.100.100/401950 |
| bioplatforms_project | Australian Microbiome Initiative (AM) |
| bioplatforms_project_code | AM_DNP |
| biotic_relationship | Free-living |
| carbonate (mg/L) | -9999.0 |
| ccg_jira_ticket | BPAOPS-1159 |
| chloride (mg/L) | -9999.0 |
| collection_date | 2021-06-16T00:00:00 |
| comments | 138600_16S_K39YG_ATGAGACT-AAGCAGCA |
| conductivity_aqueous (S/m) | -9999.0 |
| data_type | 16S |
| database_schema_definitions_url | https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx |
| dataset_id | 102.100.100/401950 |
| date_of_transfer | 2021-11-03 |
| date_of_transfer_to_archive | 2021-11-03 |
| depth (m) | 0.0 |
| depth_lower (m) | 0.0 |
| depth_upper (m) | 0.0 |
| description | MiSeq data package |
| dilution_used | Neat |
| env_broad_scale | 1 Conservation and Natural Environments |
| env_local_scale | 1.1 Nature conservation |
| env_medium | Fresh water [ENVO_00002011] |
| flow_id | K39YG |
| folder_name | 20211103_AM_16S_UNSW_K39YG |
| geo_loc_name | Australia:Northern Territory |
| icp_te_boron (mg/L) | -9999.0 |
| icp_te_calcium (mg/L) | -9999.0 |
| icp_te_copper (mg/L) | -9999.0 |
| icp_te_iron (mg/L) | -9999.0 |
| icp_te_manganese (mg/L) | -9999.0 |
| icp_te_phosphorus (mg/L) | -9999.0 |
| icp_te_sulfur (mg/L) | -9999.0 |
| icp_te_zinc (mg/L) | -9999.0 |
| index | ATGAGACT-AAGCAGCA |
| lat_lon (decimal_degrees) | -14.02589 136.54871 |
| latitude (decimal_degrees) | -14.02589 |
| longitude (decimal_degrees) | 136.54871 |
| magnesium (mg/L) | -9999.0 |
| nitrate (μmol/L) | -9999.0 |
| nucl_acid_ext | meth_3.1.7 |
| omics | Genomics |
| pass_fail | P |
| ph | -9999.0 |
| potassium (mg/L) | -9999.0 |
| reads | 216390.0 |
| samp_collect_device | meth_1.22 |
| samp_size (L) | 2.0 |
| samp_vol_we_dna_ext (L) | 2.0 |
| sample_attribution | Jared Archibald |
| sample_database_file | AM_db_v4.2_202402091224.db |
| sample_id | 102.100.100/138600 |
| sample_metadata_ingest_date | 2022-08-04 11:42:25 |
| sample_metadata_ingest_file | Groot_water_merge_CSBPflagValues_xlsxUTC_convert_xlsx |
| sample_metadata_update_history | bush_blitz_water_sampling_method_UPDATE_xlsx; Soil_geo_loc_name_UPDATE2_xlsx; AM_add_meth_for_ALL_DB_UPDATE_xlsx; |
| sample_submitter | Bissett |
| sample_type | Fresh water |
| sequencing_facility | Ramaciotti |
| sodium (mg/L) | -9999.0 |
| source_mat_id | 102.100.100/138600 |
| target | 16S |
| ticket | BPAOPS-1159 |
| url | https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/138600 |
| utc_date_sampled | 2021-06-16 |