Australian Microbiome Amplicons 16S 102.100.100/138359 J7C52
Dataset size is: 63.06 MiB
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:90:am-consortium-members |
| Access Control Date | 2020-09-08 |
| Access Control Mode | date |
| Sequence Data Type | illumina-amplicons |
| Related Data | doi:10.25953/sgfe-8838 |
| am_environment | Soil |
| ammonium_nitrogen_wt (mg/kg) | 3.0 |
| ammonium_nitrogen_wt_meth | meth_2.1 |
| amplicon | 16S |
| analysis_software | MiSeq Reporter |
| analysis_software_version | 2.6.2.3 |
| analytical_platform | MiSeq |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/amd/amplicons-miseq/16s/BPAOPS-913/ |
| bioplatforms_dataset_id | 102.100.100/401933 |
| bioplatforms_project | Australian Microbiome Initiative (AM) |
| bioplatforms_project_code | AM0017 |
| biotic_relationship | Free-living |
| boron_hot_cacl2 (mg/kg) | 0.36 |
| boron_hot_cacl2_meth | meth_2.1 |
| ccg_jira_ticket | BPAOPS-913 |
| clay (%) | 9.19 |
| clay_meth | meth_2.1 |
| coarse_sand (%) | 63.03 |
| coarse_sand_meth | meth_2.1 |
| collection_date | 2019-10-15T03:00:00 |
| color | GRBR |
| comments | 138359_16S_J7C52_TCTAGCGT-ACGCGTGA |
| conductivity (dS/m) | 0.025 |
| conductivity_meth | meth_2.1 |
| data_type | 16S |
| database_schema_definitions_url | https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx |
| dataset_id | 102.100.100/401933 |
| date_of_transfer | 2020-06-10 |
| date_of_transfer_to_archive | 2020-06-16 |
| depth (m) | 0.2 |
| depth_lower (m) | 0.3 |
| depth_upper (m) | 0.2 |
| description | MiSeq data package |
| dilution_used | neat |
| dtpa_copper (mg/kg) | 0.47 |
| dtpa_copper_meth | meth_2.1 |
| dtpa_iron (mg/kg) | 32.7 |
| dtpa_iron_meth | meth_2.1 |
| dtpa_manganese (mg/kg) | 2.37 |
| dtpa_manganese_meth | meth_2.1 |
| dtpa_zinc (mg/kg) | 0.34 |
| dtpa_zinc_meth | meth_2.1 |
| elev (m) | 308.0 |
| env_broad_scale | 1 Conservation and Natural Environments |
| env_local_scale | 1.3 Other minimal use |
| env_medium | Soil [ENVO_00001998] |
| exc_aluminium (meq/100g) | 0.12 |
| exc_aluminium_meth | meth_2.1 |
| exc_calcium (meq/100g) | 4.19 |
| exc_calcium_meth | meth_2.1 |
| exc_magnesium (meq/100g) | 0.97 |
| exc_magnesium_meth | meth_2.1 |
| exc_potassium (meq/100g) | 0.13 |
| exc_potassium_meth | meth_2.1 |
| exc_sodium (meq/100g) | 0.12 |
| exc_sodium_meth | meth_2.1 |
| fine_sand (%) | 22.65 |
| fine_sand_meth | meth_2.1 |
| flow_id | J7C52 |
| folder_name | 20200610_AM_16S_UNSW_J7C52 |
| funding_agency | DBCA/Industry |
| general_env_feature | Temperate |
| geo_loc_name | Australia:Western Australia [GAZ_00002789] |
| gravel (%) | 55-60 |
| gravel_meth | meth_2.1 |
| horizon | A horizon |
| index | TCTAGCGT-ACGCGTGA |
| lat_lon (decimal_degrees) | -32.9227 116.46573 |
| latitude (decimal_degrees) | -32.9227 |
| local_class | Chromosol |
| local_class_meth | meth_2.27 |
| longitude (decimal_degrees) | 116.46573 |
| nitrate_nitrogen (mg/kg) | 1e-10 |
| nitrate_nitrogen_meth | meth_2.1 |
| nucl_acid_ext | meth_3.1.1 |
| omics | Genomics |
| organic_carbon (%) | 1.94 |
| organic_carbon_meth | meth_2.1 |
| pass_fail | P |
| ph | 5.1 |
| ph_meth | meth_2.1 |
| ph_solid_h2o | 6.4 |
| ph_solid_h2o_meth | meth_2.1 |
| phosphorus_colwell (mg/kg) | 3.0 |
| phosphorus_colwell_meth | meth_2.1 |
| potassium_colwell (mg/kg) | 58.0 |
| potassium_colwell_meth | meth_2.1 |
| reads | 130480.0 |
| samp_collect_device | meth_1.1 |
| sample_attribution | Siegy Krauss |
| sample_database_file | AM_db_v4.2_202408091431.db |
| sample_id | 102.100.100/138359 |
| sample_metadata_ingest_date | 2021-04-23 11:13:31 |
| sample_metadata_ingest_file | AM_ContextualMetadata_AM0017_Krauss_New_submit_sheet_FILLED_xlsx |
| sample_metadata_update_history | soil_types_20210420_xlsx; SOIL_local_class_meth_UPDATE_xlsx; AM_add_meth_for_ALL_DB_UPDATE_xlsx; Soil_profile_horizon_NCBI_format_curate_UPDATE_xlsx; |
| sample_site_location_description | NE3NEAR |
| sample_submitter | Siegy Krauss |
| sample_type | Soil |
| sand (%) | 85.68 |
| sand_meth | meth_2.1 |
| sequencing_facility | Ramaciotti |
| silt (%) | 5.13 |
| silt_meth | meth_2.1 |
| source_mat_id | 102.100.100/138359 |
| store_cond | frozen |
| sulphur (mg/kg) | 3.6 |
| sulphur_meth | meth_2.1 |
| target | 16S |
| temp (degC) | 15.0 |
| texture | 2.0 |
| texture_meth | meth_2.1 |
| ticket | BPAOPS-913 |
| url | https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/138359 |
| utc_date_sampled | 2019-10-15 |
| utc_time_sampled | 03:00:00 |
| vegetation_type | Forest |