Australian Microbiome Amplicons 16S 102.100.100/137971 J6KR8
Dataset size is: 22.18 MiB
Data and Resources
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:90:am-consortium-members |
| Access Control Date | 2020-08-24 |
| Access Control Mode | date |
| Sequence Data Type | illumina-amplicons |
| Related Data | doi:10.25953/kr2e-s652 |
| am_environment | Marine |
| ammonium (μmol/L) | 0.0 |
| amplicon | 16S |
| analysis_software | MiSeq Reporter |
| analysis_software_version | 2.6.2.3 |
| analytical_platform | MiSeq |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/amd/amplicons-miseq/16s/BPAOPS-909/ |
| bioplatforms_dataset_id | 102.100.100/401952 |
| bioplatforms_project | Australian Microbiome Initiative (AM) and Collaboration (AM linked) |
| bioplatforms_project_code | AM0004 |
| biotic_relationship | Free-living |
| cast_id | CTD07 |
| ccg_jira_ticket | BPAOPS-909 |
| collection_date | 2019-05-18T23:00:00 |
| comments | 137971_16S_J6KR8_CGATCCGT-ACGCGTGA |
| data_type | 16S |
| database_schema_definitions_url | https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx |
| dataset_id | 102.100.100/401952 |
| date_of_transfer | 2020-05-26 |
| date_of_transfer_to_archive | 2020-05-28 |
| depth (m) | 1000.0 |
| depth_lower (m) | 1000.0 |
| depth_upper (m) | 1000.0 |
| description | MiSeq data package |
| dilution_used | neat |
| dna_concentration_submitter (ng/μL) | 7.9 |
| env_broad_scale | 6 Water |
| env_local_scale | 7.2 Open ocean water |
| env_medium | Sea water [ENVO_00002149] |
| flow_id | J6KR8 |
| folder_name | 20200526_AM_16S_UNSW_J6KR8 |
| funding_agency | Australian Microbiome Initiative; DP170101925 |
| general_env_feature | Marine - pelagic |
| geo_loc_name | Indian Ocean:West Australia coast |
| index | CGATCCGT-ACGCGTGA |
| lat_lon (decimal_degrees) | -36.50166667 110.0 |
| latitude (decimal_degrees) | -36.50166667 |
| longitude (decimal_degrees) | 110.0 |
| nitrate_nitrite (μmol/L) | 29.79 |
| nitrite (μmol/L) | -0.001 |
| nucl_acid_ext | Powerwater |
| omics | Genomics |
| oxygen (μmol/L) | 201.019 |
| pass_fail | P |
| phosphate (μmol/L) | 2.01 |
| pres_rel (dbar) | 1000.7 |
| reads | 45442.0 |
| salinity (PSU) | 34.3908 |
| samp_collect_device | meth_Sterivex;peristaltic pump |
| sample_attribution | Amaranta Focardi |
| sample_database_file | AM_db_v4.2_202402091224.db |
| sample_id | 102.100.100/137971 |
| sample_metadata_ingest_date | 2024-02-01 13:24:40 |
| sample_metadata_ingest_file | Sample_submission_sheet_20220211_schema_v3_vocab_2_0_3_AM0004_v3_xlsx |
| sample_site_location_description | Open Ocean |
| sample_submitter | Amaranta Focardi |
| sample_type | Pelagic |
| sequencing_facility | Ramaciotti |
| silicate (μmol/L) | 25.9 |
| source_mat_id | 102.100.100/137971 |
| store_cond | meth_minus 80c |
| synonyms | IN19v0307d1000 |
| target | 16S |
| temp (degC) | 5.639 |
| ticket | BPAOPS-909 |
| tot_depth_water_col (m) | 5378.0 |
| url | https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/137971 |
| utc_date_sampled | 2019-05-18 |
| utc_time_sampled | 23:00:00 |
| voyage_code | IN2019_V03 |
| voyage_survey_link | https://www.cmar.csiro.au/data/trawler/survey_details.cfm?survey=IN2019_V03 |