Australian Microbiome Amplicons 18S 102.100.100/403691 LHPV7
Dataset size is: 25.00 MiB
This dataset is currently under a short embargo period until August 13, 2024 to enable primary access by research partners.
If you would like access during this period please contact us here or contact the project lead directly (see details in the table below) for collaboration opportunities.
Data and Resources
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
Field | Value |
---|---|
Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:90:am-consortium-members |
Access Control Date | 2024-08-13 |
Access Control Mode | date |
Sequence Data Type | illumina-amplicons |
am_environment | Marine |
amplicon | 18S |
analysis_software | Local Run Manager |
analysis_software_version | 4.1.0 |
analytical_platform | MiSeq |
base_url | https://downloads-qcif.bioplatforms.com/bpa/amd/amplicons-miseq/18s/BPAOPS-1587/240219_AM_18S_UNSW_LHPV7/ |
biotic_relationship | Free-living |
ccg_jira_ticket | BPAOPS-1587 |
chlorophyll_ctd (mg/m3) | 2.9647 |
chlorophyll_ctd_meth | meth_2.2 |
collection_date | 2023-04-18T22:33:00 |
comments | 403691_18S_LHPV7_GTAGAGGA-CTATTAAG |
conductivity_aqueous (S/m) | 5.071 |
conductivity_aqueous_meth | meth_2.2 |
data_type | 18S |
database_schema_definitions_url | https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx |
date_of_transfer | 2024-05-15 |
date_of_transfer_to_archive | 2024-05-16 |
density (kg/m3) | 1024.542 |
density_meth | meth_2.2 |
depth (m) | 25.0 |
depth_lower (m) | 25.0 |
depth_upper (m) | 25.0 |
description | MiSeq data package |
dilution_used | neat |
download | Replaces BPAOPS-1572 |
env_broad_scale | 7 Other |
env_local_scale | 7.2.1 Open ocean water-conservation |
env_medium | Sea water [ENVO_00002149] |
flow_id | LHPV7 |
folder_name | 240219_AM_18S_UNSW_LHPV7 |
funding_agency | IMOS|CSIRO |
general_env_feature | Marine - neritic (coastal off shore) |
geo_loc_name | Australia:East Australian Current [GAZ:00000352] |
imos_site_code | NRSPHB |
index | GTAGAGGA-CTATTAAG |
lat_lon (decimal_degrees) | -34.1192 151.2267 |
latitude (decimal_degrees) | -34.1192 |
longitude (decimal_degrees) | 151.2267 |
nitrate (μmol/L) | 1e-10 |
nitrate_meth | meth_2.2 |
nitrite (μmol/L) | 1e-10 |
nitrite_meth | meth_2.2 |
nrs_sample_code | PHB20230418_25 |
nrs_trip_code | PHB20230418 |
nucl_acid_ext | meth_3.1.9 |
omics | Genomics |
oxygen_ctd_vol (mL/L) | 211.6092 |
oxygen_ctd_vol_meth | meth_2.2 |
pass_fail | P |
phosphate (μmol/L) | 0.09 |
phosphate_meth | meth_2.2 |
reads | 75038.0 |
salinity (PSU) | 35.3838 |
salinity_lab (PSU) | 35.378 |
salinity_lab_meth | meth_2.2 |
salinity_meth | meth_2.2 |
samp_collect_device | meth_1.4 |
samp_mat_process | meth_1.4 |
sample_attribution | IMOS|CSIRO |
sample_database_file | AM_db_v4.2_202402091224.db |
sample_id | 102.100.100/403691 |
sample_metadata_ingest_date | 2024-02-09 12:24:08 |
sample_metadata_ingest_file | AODN_AM_NRS_202402081638_GOLD_xlsx |
sample_site_location_description | Port Hacking |
sample_submitter | Jodie van de Kamp [https://orcid.org/0000-0003-2167-0938] |
sample_type | Pelagic |
secchi_depth (m) | 14.0 |
secchi_depth_meth | meth_2.2 |
sequencing_facility | Ramaciotti |
silicate (μmol/L) | 0.5 |
silicate_meth | meth_2.2 |
source_mat_id | 102.100.100/403691 |
store_cond | meth_1.4 |
target | 18S |
temp (degC) | 22.2404 |
temp_meth | meth_2.2 |
ticket | BPAOPS-1587 |
turbidity (NTU) | 0.0462 |
turbidity_meth | meth_2.2 |
url | https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/403691 |
utc_date_sampled | 2023-04-18 |
utc_time_sampled | 22:33:00 |
zooplankton_biomass (mg/m3) | 6.8534 |
zooplankton_biomass_meth | meth_2.2int |