Marine Microbes Metagenomics 102.100.100/36327
Dataset size is: 4.74 GiB
Data and Resources
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member_after_embargo:archive_ingestion_date:90:am-consortium-members |
| Access Control Date | 2018-08-23 |
| Access Control Mode | date |
| Sequence Data Type | illumina-shortread |
| alkalinity (μmol/kg) | -9999.0 |
| am_environment | Marine |
| ammonium (μmol/L) | 0.219 |
| ammonium_meth | -9999 |
| analysis_software_version | 1.8.2 |
| analytical_platform | HiSeq |
| archive_ingestion_date | 2018-05-25 |
| bioplatforms_project | Marine Microbes Project (MM) |
| biotic_relationship | Free-living |
| chlorophyll_a (mg/m3) | 0.443 |
| chlorophyll_a_meth | -9999 |
| coastal_id | MagneticIsland_Geoffrey Bay |
| collection_date | 2017-02-20T00:00:00 |
| conductivity_aqueous (S/m) | -9999.0 |
| data_generated | 2018-05-25 |
| data_type | Metagenome |
| database_schema_definitions_url | https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx |
| dataset_url | https://downloads-qcif.bioplatforms.com/bpa/marine_microbes/raw/metagenomics/agrf/BPAOPS-611/ |
| date_of_transfer | 2018-05-25 |
| depth (m) | 2.0 |
| depth_lower (m) | 2.0 |
| depth_upper (m) | 2.0 |
| description | MM |
| env_broad_scale | -9999 |
| env_local_scale | -9999 |
| env_medium | Sea water [ENVO_00002149] |
| facility | AGRF |
| folder_name | 20180525_AGRF_BPA_MM_HHNMYBCX2 |
| funding_agency | -9999 |
| general_env_feature | -9999 |
| geo_loc_name | Australia:Great Barrier Reef Marine Park [GAZ_00049080] |
| insert_size_range | 480bp |
| lat_lon (decimal_degrees) | -19.154109 146.6426 |
| latitude (decimal_degrees) | -19.154109 |
| library_construction_protocol | Nextera XT |
| light_intensity (lux) | -9999.0 |
| longitude (decimal_degrees) | 146.6426 |
| microbial_abundance (cells/mL) | 1030250.0 |
| microbial_abundance_meth | -9999 |
| ncbi_bioproject_accession | PRJNA385736 |
| ncbi_biosample_accession | SAMN08953305 |
| nitrate (μmol/L) | -9999.0 |
| nitrate_nitrite (μmol/L) | 0.969 |
| nitrate_nitrite_meth | -9999 |
| nitrite (μmol/L) | 0.044 |
| nitrite_meth | -9999 |
| npic (mg/L) | 0.116 |
| npic_meth | -9999 |
| npoc (mg/L) | 1.309 |
| npoc_meth | -9999 |
| nucl_acid_ext | meth_3.1.4 |
| omics | metagenomics |
| oxygen (μmol/L) | -9999.0 |
| oxygen_ctd_vol (mL/L) | -9999.0 |
| part_org_carb (μmol/L) | 12.983 |
| part_org_carb_meth | -9999 |
| ph | -9999.0 |
| phosphate (μmol/L) | 0.08 |
| phosphate_meth | -9999 |
| pn (μmol/L) | 1.691 |
| pn_meth | -9999 |
| read_length | 250bp |
| salinity_lab (PSU) | 35.358 |
| salinity_lab_meth | -9999 |
| samp_collect_device | meth_1.7 |
| samp_mat_process | meth_1.7 |
| sample_attribution | -9999 |
| sample_database_file | AM_db_v4.2_202408091431.db |
| sample_extraction_id | 36327_1 |
| sample_id | 102.100.100/36327 |
| sample_metadata_ingest_date | 2024-06-21 15:31:43 |
| sample_metadata_ingest_file | coastalMM_Coastal_water_TT_source_docs_curated_20240620_FullREPLACE_xlsx |
| sample_site_location_description | Magnetic Island:Geoffrey Bay |
| sample_submission_date | 2018-05-25 |
| sample_submitter | Bettina Glasl |
| sample_type | Coastal water |
| sequencer | HiSeq 2500 |
| sio2 (μmol/L) | 3.864 |
| sio2_meth | -9999 |
| source_mat_id | 102.100.100/36327 |
| store_cond | meth_1.7 |
| temp (degC) | 30.43155 |
| temp_meth | -9999 |
| ticket | BPAOPS-611 |
| tot_carb (%) | -9999.0 |
| total_co2 (μmol/kg) | -9999.0 |
| total_inorganic_carbon (%) | -9999.0 |
| tss (mg/L) | 0.615 |
| tss_meth | -9999 |
| turbidity (NTU) | -9999.0 |
| url | https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/36327 |
| utc_date_sampled | 2017-02-20 |
| utc_time_sampled | 00:00:00 |