Marine Microbes Amplicons 16S 102.100.100/57817 BH3PP
Dataset size is: 87.68 MiB
Data and Resources
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
Field | Value |
---|---|
Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
Resource Permissions | organization_member_after_embargo:archive_ingestion_date:90:am-consortium-members |
Access Control Date | 2018-01-29 |
Access Control Mode | date |
Sequence Data Type | illumina-amplicons |
absorbance_260_280_ratio_submitter | -9999.0 |
am_environment | Marine |
amplicon | 16S |
analysis_software_version | 2.5.1.3 |
analytical_platform | MiSeq |
archive_ingestion_date | 2017-10-31 |
bioplatforms_project | Marine Microbes Project (MM) |
biotic_relationship | Free-living |
coastal_id | TP_141216_3 |
collection_date | 2016-12-14T01:00:00 |
comments | 57817_1_16S_UNSW_TCACGGGA_ACGACGTG_BH3PP |
contextual_data_submission_date | 2017-08-21 |
data_generated | 2017-10-31 |
data_type | 16S |
database_schema_definitions_url | https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx |
dataset_url | https://downloads-qcif.bioplatforms.com/bpa/marine_microbes/raw/amplicons/16s/ramaciotti/BPAOPS-378/ |
date_of_transfer | 2017-10-31 |
depth (m) | 3.0 |
depth_lower (m) | 3.0 |
depth_upper (m) | 3.0 |
description | MM |
dilution_used | neat |
dna_concentration_submitter (ng/μL) | 7.4 |
dna_concentration_submitter_meth | meth_3.3.1 |
env_broad_scale | 7 Other |
env_local_scale | 7.1.3 Coastal water-intensive use |
env_medium | Sea water [ENVO_00002149] |
facility | RAMACIOTTI |
fine_sediment (%) | 0.54 |
fine_sediment_meth | meth_2.14 |
flow_id | BH3PP |
folder_name | 20171031_UNSW_BPA_MM_BH3PP |
funding_agency | UTS; CRC food agility |
general_env_feature | Marine - neritic (coastal off shore) |
geo_loc_name | Australia:Botany Bay [GAZ_00002797] |
gravel (%) | -9999.0 |
lat_lon (decimal_degrees) | -34.010214 151.125875 |
latitude (decimal_degrees) | -34.010214 |
longitude (decimal_degrees) | 151.125875 |
mm_amplicon_linkage | BH3PP |
ncbi_bioproject_accession | PRJNA385736 |
ncbi_biosample_accession | SAMN08953931 |
nucl_acid_ext | meth_3.1.3 |
omics | Genomics |
pass_fail | P |
read_length | 300bp |
reads | 179807.0 |
samp_collect_device | meth_1.5 |
samp_mat_process | meth_1.5 |
sample_attribution | UTS; CRC food agility |
sample_database_file | AM_db_v4.2_202408091431.db |
sample_extraction_id | 57817_1 |
sample_id | 102.100.100/57817 |
sample_metadata_ingest_date | 2024-06-21 15:32:26 |
sample_metadata_ingest_file | coastalMM_Sediment_TT_source_docs_curated_20240620_FullREPLACE_xlsx |
sample_site_location_description | Towra Point |
sample_submission_date | 2017-10-31 |
sample_submitter | Shauna Murray [https://orcid.org/0000-0001-7096-1307];Katherine Dafforn |
sample_type | Sediment |
sand (%) | -9999.0 |
sedimentation_rate (g/cm2/yr) | -9999.0 |
source_mat_id | 102.100.100/57817 |
store_cond | meth_1.5 |
submitter | Katherine Dafforn |
target | 16S |
ticket | BPAOPS-378 |
tot_carb (%) | -9999.0 |
tot_nitro (%) | -9999.0 |
tot_phosp (%) | -9999.0 |
url | https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/57817 |
utc_date_sampled | 2016-12-14 |
utc_time_sampled | 01:00:00 |
work_order | 20012 |