Marine Microbes Amplicons 16S 102.100.100/57564 BJT87
Dataset size is: 6.28 MiB
Data and Resources
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member_after_embargo:archive_ingestion_date:90:am-consortium-members |
| Access Control Date | 2018-03-06 |
| Access Control Mode | date |
| Sequence Data Type | illumina-amplicons |
| am_environment | Marine |
| amplicon | 16S |
| analysis_software_version | 2.5.1.3 |
| analytical_platform | MiSeq |
| archive_ingestion_date | 2017-12-06 |
| bioplatforms_project | Marine Microbes Project (MM) |
| biotic_relationship | Host associated |
| coastal_id | BI_PV_040516_2 |
| collection_date | 2016-05-04T00:45:00 |
| comments | 57564_1_16S_UNSW_TGTAATTG_ACGCGTGA_BJT87 |
| contextual_data_submission_date | 2017-09-21 |
| data_generated | 2017-12-06 |
| data_type | 16S |
| database_schema_definitions_url | https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx |
| dataset_url | https://downloads-qcif.bioplatforms.com/bpa/marine_microbes/raw/amplicons/16s/ramaciotti/BPAOPS-426/ |
| date_of_transfer | 2017-12-06 |
| depth (m) | 7.0 |
| depth_lower (m) | 7.0 |
| depth_upper (m) | 7.0 |
| description | MM |
| dilution_used | 2x |
| env_broad_scale | 7 Other |
| env_local_scale | 7.1.3 Coastal water-intensive use |
| env_medium | Sea water [ENVO_00002149] |
| facility | RAMACIOTTI |
| flow_id | BJT87 |
| folder_name | 20171206_UNSW_BPA_MM_BJT87 |
| funding_agency | UNSW; Betty and Gordon Moore Foundation |
| general_env_feature | Marine - neritic (coastal off shore) |
| geo_loc_name | Australia:Botany Bay [GAZ_00002797] |
| host_abundance (individuals/m2) | -9999.0 |
| host_associated_microbiome_zone | -9999 |
| host_state | Healthy |
| host_type | Coral |
| lat_lon (decimal_degrees) | -33.991389 151.232778 |
| latitude (decimal_degrees) | -33.991389 |
| longitude (decimal_degrees) | 151.232778 |
| mm_amplicon_linkage | BJT87 |
| ncbi_bioproject_accession | PRJNA385736 |
| ncbi_biosample_accession | SAMN08953683 |
| nucl_acid_ext | meth_3.1.6 |
| omics | Genomics |
| pam_fluorometer | -9999.0 |
| pass_fail | F |
| read_length | 300bp |
| reads | 15201.0 |
| samp_collect_device | meth_1.14 |
| samp_mat_process | meth_1.14 |
| sample_attribution | UNSW; Betty and Gordon Moore Foundation |
| sample_database_file | AM_db_v4.2_202408091431.db |
| sample_extraction_id | 57564_1 |
| sample_id | 102.100.100/57564 |
| sample_metadata_ingest_date | 2024-06-21 15:31:12 |
| sample_metadata_ingest_file | coastalMM_Coral_TT_source_docs_curated_20240620_FullREPLACE_xlsx |
| sample_site_location_description | Bare Island |
| sample_submission_date | 2017-12-06 |
| sample_submitter | Torsten Thomas [https://orcid.org/0000-0001-9557-3001]; Samantha Goyen |
| sample_type | Coral |
| source_mat_id | 102.100.100/57564 |
| specific_host | Plesiastrea versipora [NCBI:txid187483] |
| store_cond | meth_1.14 |
| submitter | Samantha Goyen |
| target | 16S |
| ticket | BPAOPS-426 |
| touching_organisms | -9999 |
| url | https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/57564 |
| utc_date_sampled | 2016-05-04 |
| utc_time_sampled | 00:45:00 |
| work_order | 20014 |