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TSI Pacbio HiFi 102.100.100/357367

Neophema chrysogaster, Australia NSW

Data and Resources

Additional Info

Field Value
Geospatial Coverage
Resource Permissions organization_member
access_rights Open Access
ala_specimen_url
analysis_software SMRT Link Analysis
analysis_software_version 9.0.0.92188
ancillary_notes Medical euthanasia for welfare purposes
archive_ingestion_date 2020-12-09
associated_media
barcode_id
base_url https://downloads-qcif.bioplatforms.com/bpa/tsi_staging/pacbio-hifi/BPAOPS-1001/TSI_AGRF_PacBio_C20104110/357367_TSI_AGRF_PacBio_DA052917_HiFi_metadata/
birth_date 2014-12-27
cell_postion D01
certainty Certain
class Aves
collection_date 2020-08-20
collection_method Medical euthanasia for welfare purposes
collector Carolyn Hogg, USYD
collector_sample_id 1.0
common_name Orange-bellied parrot
contextual_data_submission_date
coord_uncertainty_metres
country Australia
data_context Reference genome
data_custodian Carolyn Hogg (USYD)
data_generated 2020-12-09
data_type Pacbio HiFi
dataset_id 102.100.100/358725
dataset_url
date_of_transfer
death_date 2020-08-20
description
dna_treatment Shearing
experimental_design
facility_sample_id 357367.0
family Psittacidae
file_name 357367_TSI_AGRF_PacBio_DA052917.ccs.bam; 357367_TSI_AGRF_PacBio_DA052917.subreads.bam
file_type
flowcell_id DA052917
flowcell_type SMRT Cell 8M
folder_name TSI_AGRF_PacBio_C20104110
genotypic_sex
genus Neophema
habitat
identified_by
insert_size_range 15976.0
institution_name University of Sydney
latitude
library_comments NA
library_construction_protocol Preparing HiFi SMRTbell® Libraries using SMRTbell Express Template Prep Kit 2.0
library_id 102.100.100/357367
library_index_id NA
library_index_sequence NA
library_layout NA
library_location AGRF
library_ng_ul 154.0
library_oligo_sequence NA
library_pcr_cycles NA
library_pcr_reps NA
library_prep_date 2020-11-10
library_prepared_by Trent Peters
library_selection RANDOM
library_source GENOMIC
library_status Data available
library_strategy Preparing HiFi SMRTbell® Libraries using SMRTbell Express Template Prep Kit 2.0
library_type WGS
lifestage Adult
location_text Priam Psitticulture Centre; 2 Australis Place, Queanbeyan, NSW 2621
longitude
material_conc_ng_ul 87.0
material_extracted_by Emma Peel, Kate Farquharson, Elspeth McLennan (USYD)
material_extraction_date 2020-09-30
material_extraction_method Circulomics Kit ("Nanobind Tissue Big DNA Kit v1.0 11/19")
material_extraction_type DNA
method_of_determination Dissection
movie_length 30hrs
n_libraries_pooled NA
order Psittaciformes
phenotypic_sex Male
phylum Chordata
prior_genetics
sample_custodian Carolyn Hogg
sample_id 102.100.100/355357
sample_quality Good
sample_submission_date
sequencing_facility AGRF
sequencing_model PacBio Sequel II
sequencing_platform PACBIO_SMRT
source_population
species chrysogaster
specimen_id 2035.0
specimen_id_description Studbook
state_or_region NSW
subspecies
taxon_id 678581.0
taxonomic_group Bird
ticket BPAOPS-1001
tissue_collection
tissue_number 2035_pooled_heart_kidney_pectoralmuscle
tissue_preservation Flash frozen at -80C
tissue_type Pooled sample of heart, kidney and pectoral muscle
type_status
wild_captive Captive
work_order 14003.0