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TSI Genomics ddRAD 102.100.100/358729 library

Pseudomys oralis ddRAD dataset not demultiplexed

Data and Resources

Additional Info

Field Value
Geospatial Coverage
Resource Permissions organization_member
analysis_software
analysis_software_version
archive_ingestion_date 2021-01-29
base_url https://downloads-qcif.bioplatforms.com/bpa/tsi_staging/ddrad/BPAOPS-1021/AGRF_TSI_HVMTKDRXX_358727_358729/
bpa_dataset_id 102.100.100/358729
cell_postion
contextual_data_submission_date
data_context Population Genomics
data_custodian Kevin C. Rowe
data_generated 2021-01-29
data_type Illumina FASTQ
dataset_id 102.100.100/358729
dataset_url
date_of_transfer 2021-01-29
description NovaSeq 6000 ddRAD Pseudomys oralis ddRAD (data set ID 358729) and Galaxias fontanus ddRAD (data set ID 358727)
dna_treatment
experimental_design PstI and MseI
file_name
file_type
flowcell_id HVMTKDRXX
flowcell_type SP 200
folder_name AGRF_TSI_HTW2NDRXX_358724
genus Pseudomys
insert_size_range
latitude
library_comments
library_construction_protocol ddRAD (based on Peterson et al 2012)
library_layout Single
library_location AGRF Melbourne
library_ng_ul
library_pcr_cycles 11.0
library_pcr_reps 7.0
library_pool_index_id
library_pool_index_sequence
library_pool_oligo_sequence
library_prep_date 2020-12-14
library_prepared_by Jade Cooke
library_selection Reduced Representation
library_source Genomic
library_status Data available
library_strategy RAD-Seq
library_type ddRAD_AGRF
longitude
movie_length
n_libraries_pooled 3.0
sample_submission_date 2021-01-29
sequencing_facility AGRF Melbourne
sequencing_model Illumina NovaSeq 6000
sequencing_platform illumina
species oralis
ticket BPAOPS-1021
work_order 14005