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Stemcell SmallRNA 102.100.100/29578

Stemcell SmallRNA 102.100.100/29578

Data and Resources

Additional Info

Field Value
Geospatial Coverage
Resource Permissions organization_member
analysis_software_version 1.8.2
analytical_platform Small RNA
archive_ingestion_date 2016-11-07
bpa_dataset_id 102.100.100/52051
cell_type C11 hiPSCs were genomed edited to knock in a fluorescent protein into the endogenous SOX10 locus. This line was differentiated to neural crest cells. SOX10 positive and negative cells were harvested for analysis
contextual_data_submission_date 2016-09-21
data_generated 2016-11-07
data_type FastQ
dataset_url https://downloads-qcif.bioplatforms.com/bpa/stemcell/raw/small_rna/agrf/BPAOPS-54/
date_of_transfer 2016-11-07
description Stem Cell Transcriptome
disease_state WT
extract_protocol Total RNA extracted using qiagen miRNeasy mini kit
facility AGRF
folder_name 20161107_AGRF_BPA_StemCells_CA7VCANXX
growth_protocol
insert_size_range 15-35bp
labelling
library_construction_protocol TruSeq RNA library
library_strategy
omics Transcriptomics
organism_part
plate_number
replicate_group_id 4.0
research_group Ernst Wolvetang
sample_description Total RNA eluted in H27
sample_id 102.100.100/29578
sample_name 129_7 SOX10:mMaplenegative
sample_submission_date 2016-09-21
sequencer HiSeq 2500
species Homo sapiens
stem_cell_line PSC - Neural crest
stem_cell_state Pluripotent stem cell state
submitter Anu Balachandran
ticket BPAOPS-54
tissue
total_samples
treatment_protocol
well_number