Stemcell SingleCellRNASeq 25116-28799

Stemcell SingleCellRNASeq 25116-28799

Data and Resources

Additional Info

Field Value
Geospatial Coverage
Resource Permissions organization_member
Sequence Data Type illumina-10x
analytical_platform Single Cell RNAseq
archive_ingestion_date 2016-11-04
bpa_dataset_id 102.100.100/52053
cell_type
contextual_data_submission_date 2016-01-09
data_generated 2016-11-04
data_type FastQ
dataset_url https://downloads-qcif.bioplatforms.com/bpa/stemcell/raw/single_cell_rnaseq/ramaciotti/BPAOPS-51/
date_of_transfer 2016-11-04
description SOX10negative (25116 - 28799) (384 single cell transcriptomes)
disease_state NA
extract_protocol
facility Ramaciotti
fastq_generation Basespace
flow_id HVC2VBGXY
folder_name 20161017_UNSW_BPA_Stemcells_HVC2VBGXY
growth_protocol mMaple negative
insert_size_range 200-1000bp
labelling
library_construction_protocol optimised version of CEL-Seq2 (Hashimshony et al., 2016)
library_strategy Differentiated from hIPSC
omics Transcriptomics
organism_part
plate_number 2
replicate_group_id
research_group Ernst Wolvetang
sample_description SOX10 negative cells deposited in empty wells using FACS protocol
sample_id 102.100.100/25116
sample_id_range 25116-28799
sample_name SOX10 neg empty
sample_submission_date 2016-01-09
sequencer NextSeq500
species Homo sapiens
stem_cell_line PSC - Neural crest
stem_cell_state Pluripotent stem cell state
submitter Anu Balachandran
ticket BPAOPS-51
tissue
total_samples 384
treatment_protocol
well_number