JSON

OMG ONT PromethION 102.100.100/57117 PAE69878

102.100.100/55395 Notoryctes typhlops, TT607 unknown unknown

Data and Resources

Additional Info

Field Value
Geospatial Coverage
Resource Permissions organization_member
access_rights no restrictions
ala_species_name
ala_specimen_url unknown
ancillary_notes More metadata for this sample will be available from SAM once access to records is available again (currently restricted because of COVID-19)
archive_ingestion_date 2020-04-28
associated_media NA
barcode_id unknown
base_url https://downloads-qcif.bioplatforms.com/bpa/omg_staging/ont-promethion/BPAOPS-898/
birth_date unknown
bpa_dataset_id 102.100.100/52626
bpa_library_id 102.100.100/55395
bpa_sample_id 102.100.100/57117
bpa_work_order
class Mammalia
collection_date unknown
collection_method unknown
collector unknown
collector_sample_id unknown
common_name Southern marsupial mole
conservation_sample no
conservation_status NA
contextual_data_submission_date
coord_uncertainty_metres unknown
country unknown
custodian Andrew Pask
data_custodian Stephen Frankenberg | Andrew Pask
data_generated 2020-04-28
data_type ONT fast5 and fastq
dataset_url https://data.bioplatforms.com/dataset/bpa-omg-ont-promethion-55395-pae69878
date_of_transfer 2020-04-28
death_date unknown
description ONT-Promethion- Sample ID:57117 ; library ID 55395; data set ID 52626
dna_conc_ng_ul 2ug/ul
dna_extracted_by Stephen Frankenberg
dna_extraction_date 2019-
dna_extraction_method Circulomics NanoBind kit
dna_treatment
experimental_design Promethion long read sequencing
facility_sample_id
family Notoryctidae
file
flowcell_id PAE69878
folder_name 20200417_OMG_AGRF_PAE69878
genome_sample yes
genome_status Data available
genus Notoryctes
habitat unknown
identified_by unknown
institution_name South Australian Museum
latitude
library_comments
library_index_id
library_index_sequence
library_location AGRF, Melbourne
library_ng_ul
library_oligo_sequence
library_pcr_cycles
library_pcr_reps
library_prep_date 2020-03-23
library_prep_method Ligation Sequencing Kit (SQK-LSK109)
library_prepared_by Jafar Jabari
library_status
library_type ONT Promethion
life_stage unknown
location_generalisation
location_text unknown
longitude
n_libraries_pooled
omg_project Notoryctes genome
order Notoryctemorphia
phylogenomic_sample no
phylogenomic_status NA
phylum Chordata
prior_genetics unknown
sample_quality unknown
sample_submission_date 2020-04-28
sequence_length
sequencing_facility AGRF, Melbourne
sequencing_platform ONT PrometION
sex unknown
software_version MinKNOW Core 3.6.8, Bream 4.3.20, Guppy 3.2.10
source_population unknown
species typhlops
species_name
state_or_region unknown
subspecies NA
taxon_id
taxonomic_group marsupial
ticket BPAOPS-898
tissue_collection unknown
tissue_number TT607
tissue_preservation unknown
tissue_type kidney
trace_lab no
type_status
voucher_id TT607
voucher_number unknown
voucher_or_tissue_number TT607
wild_captive wild