OMG ONT PromethION 102.100.100/57117 PAE34122

102.100.100/55395 Notoryctes typhlops, MAGNT U2999 Australia Northern Territory

Data and Resources

Additional Info

Field Value
Geospatial Coverage
Resource Permissions organization_member
Sequence Data Type ont-promethion
access_rights no restrictions
ala_species_name
ala_specimen_url NA
ancillary_notes TT607 on tube label is ABTC frozen number.
archive_ingestion_date 2020-04-28
associated_media NA
barcode_id NA
base_url https://downloads-qcif.bioplatforms.com/bpa/omg_staging/ont-promethion/BPAOPS-897/
birth_date unknown
bpa_dataset_id 102.100.100/52626
bpa_library_id 102.100.100/55395
bpa_sample_id 102.100.100/57117
bpa_work_order 40058
cell_position
class Mammalia
collection_date 1982-09-20
collection_method unknown
collector P Japaljari
collector_sample_id unknown
common_name Southern marsupial mole
contextual_data_submission_date
coord_uncertainty_metres unknown
country Australia
custodian Steve Donnellan
data_custodian Stephen Frankenberg | Andrew Pask
data_generated 2020-04-28
data_type ONT fast5 and fastq
dataset_url https://data.bioplatforms.com/dataset/bpa-omg-ont-promethion-55395-pae34122
date_of_transfer 2020-04-28
ddrad_data no
ddrad_dataset_ids NA
death_date unknown
description ONT-Promethion- Sample ID:57117 ; library ID 55395; data set ID 52626
dna_conc_ng_ul 2ug/ul
dna_extracted_by Stephen Frankenberg
dna_extraction_date 2019
dna_extraction_method Circulomics NanoBind kit
dna_treatment NA
exon_capture_data no
exon_capture_dataset_ids NA
experimental_design Promethion long read sequencing
facility_sample_id NA
family Notoryctidae
file
flowcell_id PAE34122
flowcell_type FLO-PRO002
folder_name 20200417_OMG_AGRF_PAE34122
genome_data yes
genome_dataset_ids 52626.0
genus Notoryctes
habitat unknown
identified_by unknown
insert_size_range >10 Kb
institution_name Australian Biological Tissue Collection, South Australian Museum
latitude -22.65
library_comments
library_index_id
library_index_sequence
library_location AGRF, Melbourne
library_ng_ul
library_oligo_sequence
library_pcr_cycles
library_pcr_reps
library_prep_date 2020-03-13
library_prep_method Ligation Sequencing Kit (SQK-LSK109)
library_prepared_by Jafar Jabari
library_status Data available
library_type ONT Promethion
life_stage not determined
location_generalisation
location_text Waite Creek area
longitude 130.05
n_libraries_pooled
omg_project Notoryctes genome
order Notoryctemorphia
phylum Chordata
prior_genetics unknown
sample_quality unknown
sample_submission_date 2020-04-28
sequence_length
sequencing_facility AGRF, Melbourne
sequencing_platform ONT PromethION
sex not determined
software_version MinKNOW Core 3.6.8, Bream 4.3.20, Guppy 3.2.10
source_population unknown
species typhlops
species_name Notoryctes typhlops
state_or_region Northern Territory
subspecies_or_variant NA
taxon_id 37699
taxonomic_group marsupial
ticket BPAOPS-897
tissue_collection Mammal
tissue_number ABTC07570
tissue_preservation ethanol | frozen -20C
tissue_type kidney
trace_lab no
type_status unknown
voucher_id
voucher_number MAGNT U2999
voucher_or_tissue_number MAGNT U2999
wild_captive wild