JSON

OMG ONT PromethION 102.100.100/41595 PAD87066

102.100.100/54312 Pseudomys desertor, Z21333 HMWA Australia Northern Territory

Data and Resources

Additional Info

Field Value
Geospatial Coverage
Resource Permissions organization_member
access_rights no restrictions
ala_species_name
ala_specimen_url https://biocache.ala.org.au/occurrences/a57a4ca1-380d-459d-83a3-69564542b8df
ancillary_notes DNA conc method = Qubit, DNA total µg = 18
archive_ingestion_date 2019-05-26
associated_media NA
barcode_id NA
base_url https://downloads-qcif.bioplatforms.com/bpa/omg_staging/ont-promethion/BPAOPS-860/
birth_date unknown
bpa_dataset_id 102.100.100/52614
bpa_library_id 102.100.100/54312
bpa_sample_id 102.100.100/41595
bpa_work_order
class Mammalia
collection_date 2011-07-30
collection_method elliott trap
collector Kevin Rowe
collector_sample_id KCR1274
common_name Desert Mouse
conservation_sample no
conservation_status NA
contextual_data_submission_date
coord_uncertainty_metres 200.0
country Australia
custodian Kevin Rowe | Museums Victoria
data_custodian Kevin C. Rowe
data_generated 2019-05-26
data_type ONT fast5 and fastq
dataset_url (ingested)
date_of_transfer 2019-09-26
death_date 2011-07-30
description ONT-Promethion data- sample ID:41595, library ID:54312, data set ID:52614
dna_conc_ng_ul 200.0
dna_extracted_by Kevin Rowe
dna_extraction_date 2019-05-15
dna_extraction_method Phenol-Choloroform High Molecular Weight Method
dna_treatment Phenol-Chloroform Extraction, High Molecular Weight
experimental_design 1x Promethion Flow Cell
facility_sample_id
family Muridae
file 20190919_OMG_AGRF_PAD87066
flowcell_id PAD87066
folder_name 20190919_OMG_AGRF_PAD87066
genome_sample yes
genome_status DNA extracted
genus Pseudomys
habitat Spinifex desert
identified_by Kevin Rowe
institution_name Museums Victoria
latitude 136.25366
library_comments DNA conc method = Qubit, DNA total µg = 30.24 (41598) or 11.16 (41599)
library_index_id n/a
library_index_sequence n/a
library_location
library_ng_ul 1000.0
library_oligo_sequence n/a
library_pcr_cycles n/a
library_pcr_reps n/a
library_prep_date
library_prep_method Ligation Sequencing Kit (SQK-LSK109)
library_prepared_by Jafar Jabbari
library_status sequenced
library_type Oxford Nanopore
life_stage adult organism
location_generalisation
location_text Barkly Tableland, Brunnette Downs, Bore 45
longitude -18.63133
n_libraries_pooled 1.0
omg_project Whole Genomes
order Rodentia
phylogenomic_sample no
phylogenomic_status NA
phylum Chordata
prior_genetics unknown
sample_quality high molecular weight
sample_submission_date 2019-09-26
sequence_length n/a
sequencing_facility AGRF
sequencing_platform Promethion
sex male
software_version PromethION: 19.06.9-2, Guppy version 3.0.5
source_population unknown
species desertor
species_name Pseudomys desertor
state_or_region Northern Territory
subspecies NA
taxon_id
taxonomic_group rodent
ticket BPAOPS-860
tissue_collection Mammalogy
tissue_number NMV Z21333 HMWA
tissue_preservation RNALater
tissue_type spleen
trace_lab no
type_status
voucher_id NMV_C36879
voucher_number NMV C36879
voucher_or_tissue_number Z21333 HMWA
wild_captive wild