JSON
OMG ONT PromethION 102.100.100/41599 PAD87618
Data and Resources
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54310_PAD87618_OMG_AGRF_ONTProme ... Access denied TAR
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54310_OMG_AGRF_PAD87618_library_ ... Access denied XLSX
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54310_PAD87618_OMG_AGRF_ONTProme ... Access denied TAR
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54310_PAD87618_OMG_AGRF_ONTProme ... Access denied TAR
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54310_PAD87618_OMG_AGRF_ONTProme ... Access denied TAR
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54310_PAD87618_OMG_AGRF_ONTProme ... Access denied TAR
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54310_PAD87618_OMG_AGRF_ONTProme ... Access denied TAR
Additional Info
| Field | Value |
|---|---|
| Geospatial Coverage | |
| Resource Permissions | organization_member |
| access_rights | no restrictions |
| ala_species_name | |
| ala_specimen_url | https://biocache.ala.org.au/occurrences/b05dc893-7ec9-4e01-8908-1235d2585a40 |
| ancillary_notes | DNA conc method = Qubit, DNA total µg = 11.16 |
| archive_ingestion_date | 2019-05-26 |
| associated_media | NA |
| barcode_id | NA |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/omg_staging/ont-promethion/BPAOPS-861/ |
| birth_date | unknown |
| bpa_dataset_id | 102.100.100/52612 |
| bpa_library_id | 102.100.100/54310 |
| bpa_sample_id | 102.100.100/41599 |
| bpa_work_order | |
| class | Mammalia |
| collection_date | 2013-11-28 |
| collection_method | elliott trap |
| collector | Karen Roberts |
| collector_sample_id | KKR173 |
| common_name | Broad-toothed rat |
| conservation_sample | no |
| conservation_status | NA |
| contextual_data_submission_date | |
| coord_uncertainty_metres | 200.0 |
| country | Australia |
| custodian | Kevin Rowe | Museums Victoria |
| data_custodian | Kevin C. Rowe |
| data_generated | 2019-05-26 |
| data_type | ONT fast5 and fastq |
| dataset_url | (ingested) |
| date_of_transfer | 2019-09-26 |
| death_date | 2013-11-28 |
| description | ONT-Promethion data- sample ID:41599, library ID:54310, data set ID:52612 |
| dna_conc_ng_ul | 124.0 |
| dna_extracted_by | Kevin Rowe |
| dna_extraction_date | 2019-05-15 |
| dna_extraction_method | Phenol-Choloroform High Molecular Weight Method |
| dna_treatment | Phenol-Chloroform Extraction, High Molecular Weight |
| experimental_design | 1x Promethion Flow Cell |
| facility_sample_id | AGRF |
| family | Muridae |
| file | 20190919_OMG_AGRF_ PAD87618 |
| flowcell_id | PAD87618 |
| folder_name | 20190919_OMG_AGRF_PAD87618 |
| genome_sample | yes |
| genome_status | DNA extracted |
| genus | Mastacomys |
| habitat | Alpine meadow |
| identified_by | Kevin Rowe |
| institution_name | Museums Victoria |
| latitude | 148.12485 |
| library_comments | DNA conc method = Qubit, DNA total µg = 30.24 (41598) or 11.16 (41599) |
| library_index_id | n/a |
| library_index_sequence | n/a |
| library_location | |
| library_ng_ul | 1000.0 |
| library_oligo_sequence | n/a |
| library_pcr_cycles | n/a |
| library_pcr_reps | n/a |
| library_prep_date | |
| library_prep_method | Ligation Sequencing Kit (SQK-LSK109) |
| library_prepared_by | Jafar Jabbari |
| library_status | sequenced |
| library_type | Oxford Nanopore |
| life_stage | adult organism |
| location_generalisation | |
| location_text | Alpine National Park, Davies Plain Camp, 16.91km SE of Mt Pinnibar summit, and 6.70km NE of Davies Plain Track and Kings Plain 4WD Track junction |
| longitude | -36.65264 |
| n_libraries_pooled | 1.0 |
| omg_project | Whole Genomes |
| order | Rodentia |
| phylogenomic_sample | no |
| phylogenomic_status | NA |
| phylum | Chordata |
| prior_genetics | unknown |
| sample_quality | high molecular weight |
| sample_submission_date | 2019-09-26 |
| sequence_length | n/a |
| sequencing_facility | AGRF |
| sequencing_platform | Promethion |
| sex | female |
| software_version | PromethION: 19.06.9-2, Guppy version 3.0.5 |
| source_population | unknown |
| species | fuscus |
| species_name | Mastacomys fuscus |
| state_or_region | Victoria |
| subspecies | NA |
| taxon_id | |
| taxonomic_group | rodent |
| ticket | BPAOPS-861 |
| tissue_collection | Mammalogy |
| tissue_number | NMV Z27367 HMWB |
| tissue_preservation | RNALater |
| tissue_type | spleen |
| trace_lab | no |
| type_status | |
| voucher_id | NMV_C37546 |
| voucher_number | NMV C37546 |
| voucher_or_tissue_number | Z27367 HMWB |
| wild_captive | wild |