JSON

OMG Whole Genome 102.100.100/56017 HVC7KDMXX TTCGCAA

Petrogale lateralis, S1720 Australia Western Australia

Data and Resources

Additional Info

Field Value
Geospatial Coverage

Dataset extent

Map tiles & Data by OpenStreetMap, under CC BY SA.
Resource Permissions organization_member
access_rights location information restricted
ala_species_name
ala_specimen_url NA
ancillary_notes NA
archive_ingestion_date 2020-09-23
associated_media NA
barcode_id NA
base_url https://downloads-qcif.bioplatforms.com/bpa/omg_staging/whole_genome/brf/BPAOPS-958/A00548_114_AMacDonald_52634_Black_footed_rock_wallaby_gDNA/
birth_date unknown
bpa_dataset_id 102.100.100/52634
bpa_library_id 102.100.100/56017
bpa_sample_id 102.100.100/360629
bpa_work_order 40068
class Mammalia
collection_date 1999-11-19
collection_method soft-sided box trap
collector David Pearson
collector_sample_id NA
common_name black-footed rock-wallaby
contextual_data_submission_date
coord_uncertainty_metres unknown
country Australia
custodian Mark Eldridge
data_custodian Sally Potter | Mark Eldridge
data_generated 2020-09-23
data_type Illumina FASTQ
dataset_url
date_of_transfer 2020-09-23
ddrad_data no
ddrad_dataset_ids NA
death_date unknown
description Novaseq 6000 WGS Blackfooted rock wallaby 52634
dna_conc_ng_ul 298.5
dna_extracted_by Mark Eldridge
dna_extraction_date unknown
dna_extraction_method high salt
dna_treatment
exon_capture_data yes
exon_capture_dataset_ids 52631.0
experimental_design Whole genome resequencing: DNA sheared, adapters ligated, dual indexed
facility brf
facility_sample_id 56017_HVC7KDMXX_TTCGCAA
family Macropodidae
file
flowcell_id HVC7KDMXX
folder_name A00548_114_AMacDonald_52634_Black_footed_rock_wallaby_gDNA
genome_data yes
genome_dataset_ids 52634.0
genus Petrogale
habitat unknown
identified_by
institution_name Australian Museum
latitude 122.25
library_comments library ng/┬ÁL for 200-1000 bp range
library_location ANU EBL
library_ng_ul 29.4677766063
library_pcr_cycles 12
library_pcr_reps 2.0
library_prep_date 2020-08-31
library_prep_method Meyer and Kircher protocol
library_prepared_by Anna MacDonald
library_status Submitted for sequencing
library_type exon capture
life_stage adult organism
location_generalisation
location_text Mondrain Island
longitude -34.1333
n_libraries_pooled 50
omg_project BFRW conservation
order Diprotodontia
p5_library_index_id 02
p5_library_index_sequence CTCTGCA
p5_library_oligo_sequence AATGATACGGCGACCACCGAGATCTACACtgcagagACACTCTTTCCCTACACGACGCTCTT
p7_library_index_id 40.0
p7_library_index_sequence TTCGCAA
p7_library_oligo_sequence CAAGCAGAAGACGGCATACGAGATttgcgaaGTGACTGGAGTTCAGACGTGT
phylum Chordata
prior_genetics unknown
sample_quality good
sample_submission_date 2020-09-23
sequence_length 150bp PE
sequencing_facility BRF
sequencing_platform Illumina NovaSeq S2 300 cycle
sex female
software_version unknown
source_population unknown
species lateralis
species_name Petrogale lateralis
state_or_region Western Australia
subspecies hacketti
taxon_id 172272
taxonomic_group marsupial
ticket BPAOPS-958
tissue_collection unknown
tissue_number S1720
tissue_preservation ethanol
tissue_type ear epithelium
trace_lab no
type_status
voucher_number no voucher
voucher_or_tissue_number S1720
wild_captive wild