OMG Whole Genome 102.100.100/56008 HVC7KDMXX CAGGAGG

Petrogale lateralis, S1162 Australia Western Australia

Data and Resources

Additional Info

Field Value
Geospatial Coverage

Dataset extent

Map tiles & Data by OpenStreetMap, under CC BY SA.
Resource Permissions organization_member
Sequence Data Type illumina-shortread
access_rights location information restricted
ala_specimen_url NA
ancillary_notes NA
archive_ingestion_date 2020-09-23
associated_media NA
barcode_id NA
birth_date unknown
bpa_dataset_id 102.100.100/52634
bpa_library_id 102.100.100/56008
bpa_sample_id 102.100.100/360620
bpa_work_order 40068
class Mammalia
collection_date 1993
collection_method cage trap
collector Graham Hall
collector_sample_id 1978.0
common_name Black-footed rock-wallaby
coord_uncertainty_metres unknown
country Australia
custodian Mark Eldridge | Australian Museum
data_custodian Sally Potter | Mark Eldridge
data_generated 2020-09-23
data_type Illumina FASTQ
date_of_transfer 2020-09-23
ddrad_data no
ddrad_dataset_ids NA
death_date unknown
description Novaseq 6000 WGS Blackfooted rock wallaby 52634
dna_conc_ng_ul 159.75
dna_extracted_by Mark Eldridge | Australian Museum
dna_extraction_date unknown
dna_extraction_method phenol chloroform
exon_capture_data yes
exon_capture_dataset_ids 52631.0
experimental_design Whole genome resequencing: DNA sheared, adapters ligated, dual indexed
facility brf
facility_sample_id 56008_HVC7KDMXX_CAGGAGG
family Macropodidae
flowcell_id HVC7KDMXX
folder_name A00548_114_AMacDonald_52634_Black_footed_rock_wallaby_gDNA
genome_data yes
genome_dataset_ids 52634.0
genus Petrogale
habitat unknown
identified_by unknown
institution_name Australian Museum
latitude -20.718
library_comments library ng/┬ÁL for 200-1000 bp range
library_location ANU EBL
library_ng_ul 16.953616972
library_pcr_cycles 12
library_pcr_reps 2.0
library_prep_date 2020-08-31
library_prep_method Meyer and Kircher protocol
library_prepared_by Anna MacDonald
library_status Submitted for sequencing
library_type exon capture
life_stage adult organism
location_text Barrow Island
longitude 115.3954
n_libraries_pooled 50
omg_project Conservation
order Diprotodontia
p5_library_index_id 02
p5_library_index_sequence CTCTGCA
p7_library_index_id 37.0
p7_library_index_sequence CAGGAGG
phylum Chordata
prior_genetics unknown
sample_quality good
sample_submission_date 2020-09-23
sequence_length 150bp PE
sequencing_facility BRF
sequencing_platform Illumina NovaSeq S2 300 cycle
sex male
software_version unknown
source_population unknown
species lateralis
species_name Petrogale lateralis
state_or_region Western Australia
subspecies_or_variant lateralis
taxon_id 172273
taxonomic_group marsupial
ticket BPAOPS-958
tissue_collection unknown
tissue_number S1162
tissue_preservation frozen
tissue_type blood
trace_lab no
type_status unknown
voucher_number no voucher
voucher_or_tissue_number S1162
wild_captive wild