JSON

OMG Whole Genome 102.100.100/55992 HVC7KDMXX TGCGTCC

Petrogale lateralis, DEC01504 Australia Western Australia

Data and Resources

Additional Info

Field Value
Geospatial Coverage

Dataset extent

Map tiles & Data by OpenStreetMap, under CC BY SA.
Resource Permissions organization_member
access_rights location information restricted
ala_species_name
ala_specimen_url NA
ancillary_notes T2624
archive_ingestion_date 2020-09-23
associated_media NA
barcode_id NA
base_url https://downloads-qcif.bioplatforms.com/bpa/omg_staging/whole_genome/brf/BPAOPS-958/A00548_114_AMacDonald_52634_Black_footed_rock_wallaby_gDNA/
birth_date unknown
bpa_dataset_id 102.100.100/52634
bpa_library_id 102.100.100/55992
bpa_sample_id 102.100.100/360604
bpa_work_order 40068
class Mammalia
collection_date 2012
collection_method soft-sided box trap
collector Craig Pentland | Natasha Moore | DBCA
collector_sample_id 261/262
common_name black-footed rock-wallaby
contextual_data_submission_date
coord_uncertainty_metres unknown
country Australia
custodian Kym Ottewell
data_custodian Sally Potter | Mark Eldridge
data_generated 2020-09-23
data_type Illumina FASTQ
dataset_url
date_of_transfer 2020-09-23
ddrad_data no
ddrad_dataset_ids NA
death_date unknown
description Novaseq 6000 WGS Blackfooted rock wallaby 52634
dna_conc_ng_ul
dna_extracted_by Shelley McArthur
dna_extraction_date 2014-05-14
dna_extraction_method TNES salt extraction
dna_treatment
exon_capture_data yes
exon_capture_dataset_ids 52631.0
experimental_design Whole genome resequencing: DNA sheared, adapters ligated, dual indexed
facility brf
facility_sample_id 55992_HVC7KDMXX_TGCGTCC
family Macropodidae
file
flowcell_id HVC7KDMXX
folder_name A00548_114_AMacDonald_52634_Black_footed_rock_wallaby_gDNA
genome_data yes
genome_dataset_ids 52634.0
genus Petrogale
habitat unknown
identified_by Craig Pentland Natasha Moore | DBCA
institution_name Department of Biodiversity, Conservation and Attractions
latitude 117.686603
library_comments library ng/┬ÁL for 200-1000 bp range
library_location ANU EBL
library_ng_ul 44.8540963469
library_pcr_cycles 12
library_pcr_reps 2.0
library_prep_date 2020-08-31
library_prep_method Meyer and Kircher protocol
library_prepared_by Anna MacDonald
library_status Submitted for sequencing
library_type exon capture
life_stage unknown
location_generalisation
location_text Wheatbelt, Nangeen Hill
longitude -31.835969
n_libraries_pooled 50
omg_project BFRW conservation
order Diprotodontia
p5_library_index_id 03
p5_library_index_sequence CCTAGGT
p5_library_oligo_sequence AATGATACGGCGACCACCGAGATCTACACacctaggACACTCTTTCCCTACACGACGCTCTT
p7_library_index_id 18.0
p7_library_index_sequence TGCGTCC
p7_library_oligo_sequence CAAGCAGAAGACGGCATACGAGATggacgcaGTGACTGGAGTTCAGACGTGT
phylum Chordata
prior_genetics unknown
sample_quality good
sample_submission_date 2020-09-23
sequence_length 150bp PE
sequencing_facility BRF
sequencing_platform Illumina NovaSeq S2 300 cycle
sex not determined
software_version unknown
source_population unknown
species lateralis
species_name Petrogale lateralis
state_or_region Western Australia
subspecies lateralis
taxon_id 172273
taxonomic_group marsupial
ticket BPAOPS-958
tissue_collection Mammal
tissue_number DEC01504
tissue_preservation ethanol
tissue_type ear epithelium
trace_lab no
type_status
voucher_number no voucher
voucher_or_tissue_number DEC01504
wild_captive wild