OMG Genomics HiSeq Raw 102.100.100/40129 H5HHCALXX

102.100.100/52875 Gymnobelideus leadbeateri, Gle_CAM001 Australia Victoria

Data and Resources

Additional Info

Field Value
Geospatial Coverage

Dataset extent

Map tiles & Data by OpenStreetMap, under CC BY SA.
Resource Permissions organization_member
access_rights no restrictions
ala_specimen_url NA
ancillary_notes Adult male found dead at Cambarville (Vic) during brushtail possum trapping. This specimen was collected the morning after death in sub-zero temperatures, so little sample degradation was suspected. Specimen not currently lodged in a museum collection. Voucher ID and collection details will be updated should this happen in future.
associated_media NA
barcode_id NA
base_url https://downloads-qcif.bioplatforms.com/bpa/omg_staging/genomics/raw/ramaciotti/BPAOPS-260/
birth_date unknown
bpa_dataset_id 102.100.100/40132
bpa_library_id 102.100.100/52875
bpa_sample_id 102.100.100/40129
bpa_work_order 40006
class Mammalia
collection_date 2012-07-04
collection_method found dead
collector Sam Banks
collector_sample_id Gle_CAM001
common_name Leadbeater's possum
coord_uncertainty_metres 20.0
country Australia
custodian Sam Banks
data_custodian Sam Banks
ddrad_data no
ddrad_dataset_ids NA
death_date unknown
dna_conc_ng_ul 40.0
dna_extracted_by Sam Banks (ANU)
dna_extraction_date 2017-06-19
dna_extraction_method Qiagen DNEasy kit (spin column)
dna_treatment NA
exon_capture_data no
exon_capture_dataset_ids NA
experimental_design 2 lanes HiSeq XTen (150bp PE)
facility_sample_id FR07935852
family Petauridae
flow_id H5HHCALXX
flowcell_id H5HHCALXX
genome_data yes
genome_dataset_ids 40132.0
genus Gymnobelideus
habitat Montane forest
identified_by Sam Banks
institution_name Australian National University
latitude 145.88921
library_comments NA
library_index_id NA
library_index_sequence NA
library_location Ramaciotti
library_ng_ul unknown
library_oligo_sequence NA
library_pcr_cycles NA
library_pcr_reps NA
library_prep_method KAPA PCR-free
library_prepared_by Ramaciotti
library_status Data available
library_type genome short read
life_stage adult organism
location_text Next to dam behind Parks Victoria compound at Cambarville, Yarra Ranges National Park
longitude -37.55553
n_libraries_pooled 1
omg_project Whole genomes
order Diprotodontia
phylum Chordata
prior_genetics DArTSeq
sample_quality unknown
sequence_length 150bp PE
sequencing_facility UNSW/Kinghorn
sequencing_platform Illumina HiSeq Xten
sex male
software_version Illumina bcl2fastq 2.16.0
source_population Cambarville
species leadbeateri
species_name Gymnobelideus leadbeateri
state_or_region Victoria
taxon_id 38618
taxonomic_group marsupial
ticket ramaciotti
tissue_collection Fenner School
tissue_number Gle_CAM001
tissue_preservation ethanol | frozen
tissue_type muscle
trace_lab no
voucher_number no voucher
voucher_or_tissue_number Gle_CAM001
wild_captive wild