OMG Genomics HiSeq Raw 102.100.100/40128 H5HHCALXX

102.100.100/52874 Bettongia gaimardi, Bga_MF001 Australia Australian Capital Territory

Data and Resources

Additional Info

Field Value
Geospatial Coverage

Dataset extent

Map tiles & Data by OpenStreetMap, under CC BY SA.
Resource Permissions organization_member
access_rights no restrictions
ala_specimen_url NA
ancillary_notes Two extractions from the same sample of this specimen. Dead pouch young retrieved from trap during population monitoring. Animal location is Mulligan's Flat, with this pouch young born approximately 3 years after the population was founded by animals translocated from Tasmania. Specimen not currently lodged in a museum collection. Voucher ID and collection details will be updated should this happen in future.
associated_media NA
barcode_id NA
base_url https://downloads-qcif.bioplatforms.com/bpa/omg_staging/genomics/raw/ramaciotti/BPAOPS-260/
birth_date unknown
bpa_dataset_id 102.100.100/40130
bpa_library_id 102.100.100/52874
bpa_sample_id 102.100.100/40128
bpa_work_order 40005
class Mammalia
collection_date 2016-04-01
collection_method trap
collector Adrian Manning
collector_sample_id Bga_MF001
common_name Eastern bettong
coord_uncertainty_metres 200.0
country Australia
custodian Sam Banks
data_custodian Sam Banks
ddrad_data no
ddrad_dataset_ids NA
death_date unknown
dna_conc_ng_ul 44.0
dna_extracted_by Kristen Abicair (ANU)
dna_extraction_date 2017-05-23
dna_extraction_method Qiagen DNEasy kit (spin column)
dna_treatment NA
exon_capture_data no
exon_capture_dataset_ids NA
experimental_design 2 lanes HiSeq XTen (150bp PE)
facility_sample_id FR07935850
family Potoroidae
flow_id H5HHCALXX
flowcell_id H5HHCALXX
genome_data yes
genome_dataset_ids 40130.0
genus Bettongia
habitat Woodland
identified_by Adrian Manning
institution_name Australian National University
latitude 149.1669
library_comments NA
library_index_id NA
library_index_sequence NA
library_location Ramaciotti
library_ng_ul unknown
library_oligo_sequence NA
library_pcr_cycles NA
library_pcr_reps NA
library_prep_method KAPA PCR-free
library_prepared_by Ramaciotti
library_status Data available
library_type genome short read
life_stage pouch young
location_text Mulligan's Flat Woodland Sanctuary
longitude -35.1668
n_libraries_pooled 1
omg_project Whole genomes
order Diprotodontia
phylum Chordata
prior_genetics unknown
sample_quality unknown
sequence_length 150bp PE
sequencing_facility UNSW/Kinghorn
sequencing_platform Illumina HiSeq Xten
sex male
software_version Illumina bcl2fastq 2.16.0
source_population Mulligan's Flat Woodland Sanctuary
species gaimardi
species_name Bettongia gaimardi
state_or_region Australian Capital Territory
subspecies_or_variant cuniculus
taxon_id 223568
taxonomic_group marsupial
ticket ramaciotti
tissue_collection Fenner School
tissue_number Bga_MF001
tissue_preservation ethanol | frozen
tissue_type muscle
trace_lab no
voucher_number no voucher
voucher_or_tissue_number Bga_MF001
wild_captive wild