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OMG Genomics HiSeq Raw 102.100.100/40066 HHFC5ALXX

102.100.100/52869 Petrogale penicillata, EBU35579 Australia New South Wales

Data and Resources

Additional Info

Field Value
Geospatial Coverage

Dataset extent

Map tiles & Data by OpenStreetMap, under CC BY SA.
Resource Permissions organization_member
access_rights NA
ala_species_name
ala_specimen_url NA
ancillary_notes Wild caught, died in captivity at Macquarie University | voucher at ANWC
archive_ingestion_date
associated_media NA
barcode_id NA
base_url https://downloads-qcif.bioplatforms.com/bpa/omg_staging/genomics/raw/ramaciotti/BPAOPS-213/
birth_date unknown
bpa_dataset_id 102.100.100/40126
bpa_library_id 102.100.100/52869
bpa_sample_id 102.100.100/40066
bpa_work_order
class Mammalia
collection_date 1987-06-15
collection_method cage trap
collector Robert L Close | Mark Eldridge
collector_sample_id S766, X66
common_name Brush-tailed rock-wallaby
conservation_sample no
conservation_status NA
contextual_data_submission_date
coord_uncertainty_metres unknown
country Australia
custodian Mark Eldridge
data_custodian Janine Deakin | Sally Potter
data_generated
data_type
dataset_url
date_of_transfer
death_date 1987-06-15
description
dna_conc_ng_ul 89.2
dna_extracted_by Sally Potter
dna_extraction_date 2017-02-20
dna_extraction_method Bioline kit
dna_treatment NA
experimental_design 2 lanes HiSeq XTen (150bp PE)
facility_sample_id FR07935831
family Macropodidae
flow_id HHFC5ALXX
flowcell_id HHFC5ALXX
folder_name
genome_sample yes
genome_status data available
genus Petrogale
habitat unknown
identified_by Robert L Close | Mark Eldridge
institution_name Australian Museum
latitude 150.03
library_comments NA
library_index_id NA
library_index_sequence NA
library_location Ramaciotti
library_ng_ul unknown
library_oligo_sequence NA
library_pcr_cycles NA
library_pcr_reps NA
library_prep_date
library_prep_method TruSeq DNA PCR-Free
library_prepared_by Ramaciotti
library_status Data available
library_type genome short read
life_stage adult organism
location_generalisation
location_text Jenolan Caves
longitude -33.82
n_libraries_pooled 1.0
omg_project Whole genomes
order Diprotodontia
phylogenomic_sample no
phylogenomic_status NA
phylum Chordata
prior_genetics CytB Genbank accession JQ042125.1 | ND2 Genbank accession JQ042148.1 | CO1 Genbank accession JQ042171.1 | BRCA1 Genbank accession JQ42194.1 | Omega globin Genbank accession JQ042217.1 | SRA accession SRX2512313 | PMID 11742554 | PMID 22122943 | PMID 24772286 | PMID 8830099 | PMID 28265284 | DOI: 10.1071/ZO01034 | DOI:10.1071/ZO00078 | DOI:10.1644/1545-1542(2002)083<0437:MGAOTN>2.0.CO;2 | DOI:10.1071/WR03030 |
sample_quality good
sample_submission_date
sequence_length 150bp PE
sequencing_facility UNSW/Kinghorn
sequencing_platform Illumina HiSeq Xten
sex male
software_version Illumina bcl2fastq 2.16.0
source_population Jenolan Caves
species penicillata
species_name Petrogale penicillata
state_or_region New South Wales
subspecies NA
taxon_id
taxonomic_group marsupial
ticket ramaciotti
tissue_collection EBU
tissue_number EBU35579
tissue_preservation frozen
tissue_type liver
trace_lab no
type_status
voucher_number ANWC M16835
voucher_or_tissue_number EBU35579
wild_captive semi_captive