JSON

OMG Exon Capture Raw 102.100.100/56497 AHV5LWDRXX CAGCATC

Petrogale lateralis, WAM M44935 Australia Western Australia

Data and Resources

Additional Info

Field Value
Geospatial Coverage

Dataset extent

Map tiles & Data by OpenStreetMap, under CC BY SA.
Resource Permissions organization_member
Sequence Data Type illumina-exoncapture
access_rights location information restricted
ala_species_name
ala_specimen_url NA
ancillary_notes Species ID uncertain
archive_ingestion_date 2020-12-10
associated_media NA
barcode_id NA
base_url https://downloads-qcif.bioplatforms.com/bpa/omg_staging/exon_capture/brf/BPAOPS-1012/
birth_date unknown
bpa_dataset_id 102.100.100/52631
bpa_library_id 102.100.100/56497
bpa_sample_id 102.100.100/360985
bpa_work_order 40070
class Mammalia
collection_date 1995-02-28
collection_method unknown
collector Peter Kendrick
collector_sample_id NA
common_name Black-footed rock-wallaby
contextual_data_submission_date
coord_uncertainty_metres unknown
country Australia
custodian Mark Eldridge | Australian Museum
data_custodian Mark Eldridge
data_generated 2020-12-10
data_type Illumina FASTQ
dataset_url
date_of_transfer 2020-12-07
ddrad_data no
ddrad_dataset_ids NA
death_date unknown
description Novaseq 6000 A00548_0130_AMacDonald_52631_Marsupial_gDNA
dna_conc_ng_ul 1727.88
dna_extracted_by Mark Eldridge | Australian Museum
dna_extraction_date unknown
dna_extraction_method high salt
dna_treatment
exon_capture_data yes
exon_capture_dataset_ids 52631.0
experimental_design Nimblegen Exon Capture, marsupial probes V2, dual indexed
facility brf
facility_sample_id 56497_AHV5LWDRXX_CAGCATC
family Macropodidae
file
flowcell_id AHV5LWDRXX
folder_name A00548_0130_AMacDonald_52631_Marsupial_gDNA.tar
genome_data no
genome_dataset_ids NA
genus Petrogale
habitat unknown
identified_by unknown
institution_name Australian Museum
latitude -23.2166
library_comments library ng/┬ÁL for 200-1000 bp range
library_location ANU EBL
library_ng_ul 18.6403114215
library_pcr_cycles 12.0
library_pcr_reps 2.0
library_prep_date 2020-10-30
library_prep_method Meyer and Kircher protocol
library_prepared_by Anna MacDonald | Liz Broady
library_status Submitted for sequencing
library_type exon capture
life_stage adult organism
location_generalisation
location_text Barlee Range Nature Reserve
longitude 115.9756
n_libraries_pooled 288
omg_project Conservation
order Diprotodontia
p5_library_index_id 16.0
p5_library_index_sequence TAATGCG
p5_library_oligo_sequence AATGATACGGCGACCACCGAGATCTACACcgcattaACACTCTTTCCCTACACGACGCTCTT
p7_library_index_id 82.0
p7_library_index_sequence CAGCATC
p7_library_oligo_sequence CAAGCAGAAGACGGCATACGAGATgatgctgGTGACTGGAGTTCAGACGTGT
phylum Chordata
prior_genetics unknown
sample_quality good
sample_submission_date 2020-12-07
sequence_length 100bp PE
sequencing_facility BRF
sequencing_platform Illumina NovaSeq SP 200 cycle
sex female
software_version unknown
source_population unknown
species lateralis
species_name Petrogale lateralis
state_or_region Western Australia
subspecies_or_variant NA
taxon_id 54085
taxonomic_group marsupial
ticket BPAOPS-1012
tissue_collection unknown
tissue_number S1627
tissue_preservation alcohol
tissue_type liver
trace_lab no
type_status unknown
voucher_id
voucher_number WAM M44935
voucher_or_tissue_number WAM M44935
wild_captive wild