JSON

OMG Exon Capture Raw 102.100.100/56306 HTL5KDRXX CGCAGCC

Macrotis lagotis, A006440 Australia Queensland

Data and Resources

Additional Info

Field Value
Geospatial Coverage

Dataset extent

Map tiles & Data by OpenStreetMap, under CC BY SA.
Resource Permissions organization_member
access_rights unknown
ala_species_name
ala_specimen_url NA
ancillary_notes Sample exhausted
archive_ingestion_date 2020-09-17
associated_media NA
barcode_id NA
base_url https://downloads-qcif.bioplatforms.com/bpa/omg_staging/exon_capture/brf/BPAOPS-957/A00548_0115_AMacDonald_52633_Marsupial_gDNA/
birth_date unknown
bpa_dataset_id 102.100.100/52633
bpa_library_id 102.100.100/56306
bpa_sample_id 102.100.100/360820
bpa_work_order
class Mammalia
collection_date unknown
collection_method unknown
collector unknown
collector_sample_id NA
common_name Greater bilby
contextual_data_submission_date
coord_uncertainty_metres unknown
country Australia
custodian unknown
data_custodian Kenny Travouillon | Steve Cooper
data_generated 2020-09-17
data_type Illumina FASTQ
dataset_url https://data.bioplatforms.com/dataset/a00548_115_amacdonald_52629_52630_52633_marsupial_gdna
date_of_transfer 2020-09-17
ddrad_data no
ddrad_dataset_ids NA
death_date unknown
description Novaseq 6000 Marsupial gDNA capture 52629, 52630, 52633
dna_conc_ng_ul 4.06
dna_extracted_by Liz Broady
dna_extraction_date 2019-11-07
dna_extraction_method salting out
dna_treatment 16 biorupter cycles
exon_capture_data yes
exon_capture_dataset_ids 52633.0
experimental_design Nimblegen Exon Capture, marsupial probes V2, dual indexed
facility brf
facility_sample_id 56306_HTL5KDRXX_CGCAGCC
family Thylacomyidae
file
flowcell_id HTL5KDRXX
folder_name A00548_115_AMacDonald_52629_52630_52633_Marsupial_gDNA
genome_data no
genome_dataset_ids NA
genus Macrotis
habitat unknown
identified_by unknown
institution_name Queensland Museum
latitude 140.4477778
library_comments library ng/┬ÁL for 200-1000 bp range
library_location ANU EBL
library_ng_ul 83.5153010631
library_pcr_cycles 12.0
library_pcr_reps 2.0
library_prep_date 2020-08-31
library_prep_method Meyer and Kircher protocol
library_prepared_by Anna MacDonald | Liz Broady
library_status Submitted for sequencing
library_type exon capture
life_stage unknown
location_generalisation
location_text Red Pepper site, Astrebla Downs National Park
longitude -24.06472222
n_libraries_pooled 288.0
omg_project Bandicoot taxonomy
order Peramelemorphia
p5_library_index_id 20.0
p5_library_index_sequence CATGCTC
p5_library_oligo_sequence AATGATACGGCGACCACCGAGATCTACACgagcatgACACTCTTTCCCTACACGACGCTCTT
p7_library_index_id 96.0
p7_library_index_sequence CGCAGCC
p7_library_oligo_sequence CAAGCAGAAGACGGCATACGAGATggctgcgGTGACTGGAGTTCAGACGTGT
phylum Chordata
prior_genetics unknown
sample_quality unknown
sample_submission_date 2020-09-17
sequence_length 100bp PE
sequencing_facility BRF
sequencing_platform Illumina NovaSeq SP 200 cycle
sex not determined
software_version unknown
source_population unknown
species lagotis
species_name Macrotis lagotis
state_or_region Queensland
subspecies queensland population
taxon_id
taxonomic_group marsupial
ticket BPAOPS-957
tissue_collection Mammals
tissue_number A006440
tissue_preservation unknown
tissue_type ear epithelium
trace_lab no
type_status
voucher_id
voucher_number no voucher
voucher_or_tissue_number A006440
wild_captive unknown