JSON

OMG Exon Capture Raw 102.100.100/56304 HTL5KDRXX GCAGAAG

Isoodon fusciventer, DEC01336 Australia Western Australia

Data and Resources

Additional Info

Field Value
Geospatial Coverage

Dataset extent

Map tiles & Data by OpenStreetMap, under CC BY SA.
Resource Permissions organization_member
access_rights location information restricted
ala_species_name
ala_specimen_url NA
ancillary_notes NA
archive_ingestion_date 2020-09-17
associated_media NA
barcode_id NA
base_url https://downloads-qcif.bioplatforms.com/bpa/omg_staging/exon_capture/brf/BPAOPS-957/A00548_0115_AMacDonald_52633_Marsupial_gDNA/
birth_date unknown
bpa_dataset_id 102.100.100/52633
bpa_library_id 102.100.100/56304
bpa_sample_id 102.100.100/360818
bpa_work_order
class Mammalia
collection_date 2013-04-05
collection_method Roadkill
collector Peter Glen
collector_sample_id PG01
common_name Quenda
contextual_data_submission_date
coord_uncertainty_metres unknown
country Australia
custodian Kym Ottewell
data_custodian Steve Cooper | Kym Ottewell | Anna MacDonald
data_generated 2020-09-17
data_type Illumina FASTQ
dataset_url https://data.bioplatforms.com/dataset/a00548_115_amacdonald_52629_52630_52633_marsupial_gdna
date_of_transfer 2020-09-17
ddrad_data no
ddrad_dataset_ids NA
death_date unknown
description Novaseq 6000 Marsupial gDNA capture 52629, 52630, 52633
dna_conc_ng_ul 500 ng total
dna_extracted_by Kym Ottewell | DBCA
dna_extraction_date 2014
dna_extraction_method TNES Salt extraction
dna_treatment 8 biorupter cycles
exon_capture_data yes
exon_capture_dataset_ids 52633.0
experimental_design Nimblegen Exon Capture, marsupial probes V2, dual indexed
facility brf
facility_sample_id 56304_HTL5KDRXX_GCAGAAG
family Peramelidae
file
flowcell_id HTL5KDRXX
folder_name A00548_115_AMacDonald_52629_52630_52633_Marsupial_gDNA
genome_data no
genome_dataset_ids NA
genus Isoodon
habitat unknown
identified_by Peter Glen
institution_name Department of Biodiversity, Conservation and Attractions
latitude 117.87933
library_comments library ng/┬ÁL for 200-1000 bp range
library_location ANU EBL
library_ng_ul 68.9140561507
library_pcr_cycles 12.0
library_pcr_reps 2.0
library_prep_date 2020-08-31
library_prep_method Meyer and Kircher protocol
library_prepared_by Anna MacDonald | Liz Broady
library_status Submitted for sequencing
library_type exon capture
life_stage adult organism
location_generalisation
location_text Albany, Cnr Cliff & Parade St
longitude -35.02178
n_libraries_pooled 288.0
omg_project Isoodon conservation
order Peramelemorphia
p5_library_index_id 20.0
p5_library_index_sequence CATGCTC
p5_library_oligo_sequence AATGATACGGCGACCACCGAGATCTACACgagcatgACACTCTTTCCCTACACGACGCTCTT
p7_library_index_id 80.0
p7_library_index_sequence GCAGAAG
p7_library_oligo_sequence CAAGCAGAAGACGGCATACGAGATcttctgcGTGACTGGAGTTCAGACGTGT
phylum Chordata
prior_genetics unknown
sample_quality Good
sample_submission_date 2020-09-17
sequence_length 100bp PE
sequencing_facility BRF
sequencing_platform Illumina NovaSeq SP 200 cycle
sex not determined
software_version unknown
source_population unknown
species fusciventer
species_name Isoodon fusciventer
state_or_region Western Australia
subspecies NA
taxon_id
taxonomic_group marsupial
ticket BPAOPS-957
tissue_collection Mammal
tissue_number DEC01336
tissue_preservation ethanol
tissue_type ear epithelium
trace_lab no
type_status
voucher_id
voucher_number no voucher
voucher_or_tissue_number DEC01336
wild_captive wild