JSON

OMG Exon Capture Raw 102.100.100/56290 HTL5KDRXX AGAAGAC

Petauroides volans, AM M.35716.001 Australia New South Wales

Data and Resources

Additional Info

Field Value
Geospatial Coverage

Dataset extent

Map tiles & Data by OpenStreetMap, under CC BY SA.
Resource Permissions organization_member
access_rights unknown
ala_species_name
ala_specimen_url NA
ancillary_notes No EtOH in vial (sample rotten) | low yeild
archive_ingestion_date 2020-09-17
associated_media NA
barcode_id NA
base_url https://downloads-qcif.bioplatforms.com/bpa/omg_staging/exon_capture/brf/BPAOPS-957/A00548_0115_AMacDonald_52633_Marsupial_gDNA/
birth_date unknown
bpa_dataset_id 102.100.100/52633
bpa_library_id 102.100.100/56290
bpa_sample_id 102.100.100/360804
bpa_work_order
class Mammalia
collection_date 1995-09-13
collection_method unknown
collector A Bradman
collector_sample_id M35716
common_name Greater glider
contextual_data_submission_date
coord_uncertainty_metres 10000.0
country Australia
custodian Mark Eldridge
data_custodian Mark Eldridge
data_generated 2020-09-17
data_type Illumina FASTQ
dataset_url https://data.bioplatforms.com/dataset/a00548_115_amacdonald_52629_52630_52633_marsupial_gdna
date_of_transfer 2020-09-17
ddrad_data no
ddrad_dataset_ids NA
death_date unknown
description Novaseq 6000 Marsupial gDNA capture 52629, 52630, 52633
dna_conc_ng_ul 1.17
dna_extracted_by Liz Broady
dna_extraction_date 2019-11-07
dna_extraction_method salting out
dna_treatment 12 biorupter cycles
exon_capture_data yes
exon_capture_dataset_ids 52633.0
experimental_design Nimblegen Exon Capture, marsupial probes V2, dual indexed
facility brf
facility_sample_id 56290_HTL5KDRXX_AGAAGAC
family Pseudocheiridae
file
flowcell_id HTL5KDRXX
folder_name A00548_115_AMacDonald_52629_52630_52633_Marsupial_gDNA
genome_data no
genome_dataset_ids NA
genus Petauroides
habitat unknown
identified_by unknown
institution_name Australian Museum
latitude 151.716
library_comments library ng/┬ÁL for 200-1000 bp range
library_location ANU EBL
library_ng_ul 47.3534687919
library_pcr_cycles 12.0
library_pcr_reps 2.0
library_prep_date 2020-08-31
library_prep_method Meyer and Kircher protocol
library_prepared_by Anna MacDonald | Liz Broady
library_status Submitted for sequencing
library_type exon capture
life_stage unknown
location_generalisation
location_text Walcha
longitude -31.5
n_libraries_pooled 288.0
omg_project Marsupial phylogenomics
order Diprotodontia
p5_library_index_id 19.0
p5_library_index_sequence GAATCTC
p5_library_oligo_sequence AATGATACGGCGACCACCGAGATCTACACgagattcACACTCTTTCCCTACACGACGCTCTT
p7_library_index_id 63.0
p7_library_index_sequence AGAAGAC
p7_library_oligo_sequence CAAGCAGAAGACGGCATACGAGATgtcttctGTGACTGGAGTTCAGACGTGT
phylum Chordata
prior_genetics unknown
sample_quality unknown
sample_submission_date 2020-09-17
sequence_length 100bp PE
sequencing_facility BRF
sequencing_platform Illumina NovaSeq SP 200 cycle
sex male
software_version unknown
source_population unknown
species volans
species_name Petauroides volans
state_or_region New South Wales
subspecies incanus
taxon_id
taxonomic_group marsupial
ticket BPAOPS-957
tissue_collection Mammalogy
tissue_number EBU13745
tissue_preservation unknown
tissue_type unknown
trace_lab no
type_status
voucher_id
voucher_number AM M.35716.001
voucher_or_tissue_number AM M.35716.001
wild_captive unknown